Search Results for "r package xmsannotator" - Page 5
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Showing 261 open source projects for "r package xmsannotator"
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fscaret_shiny
UI for fscaret
User Interface (ui) application which implements the automated feature selection provided by the 'fscaret' package of R-environment. -
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rcqp
R interface to the Corpus Query Protocol
Implements the Corpus Query Protocol as a package for the R statistical environment. It allows to query linguistic corpora and manipulate the data as native R objects. It is based on the CWB software. -
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pkg_version-zypper.rb
script to ease managing package upgrades in openSUSE
... of programs for no big reason (usually) and do it only when programs in repository has been updated. NB! It is not an official recommendation to do so as packages have their version number for a reason! I personally have been ignoring RPM versions for years and have not been into any trouble because of that. Usually you'd want to use the script as: sudo ./pkg_version-zypper.rb -f '<' -r -u But you can also take package versions into account: sudo ./pkg_version-zypper.rb -f '<' -r -u -p -
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Peptrix
Label free peptide profiling
... database, which contains all metadata, such as experiment numbers and sample codes, 3) a FTP (File Transport Protocol) server to store all raw mass spectrometry files and processed data, 4) the software package R, which is used for modular statistical calculations, such as the Wilcoxon-Mann-Whitney rank sum test. -
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rDock
A Fast, OpenSource Program for Docking Ligands to Proteins and N.Acids
rDock is a fast and versatile Open Source docking program that can be used to dock small molecules against proteins and nucleic acids. It is designed for High Throughput Virtual Screening (HTVS) campaigns and Binding Mode prediction studies. rDock is mainly written in C++ and accessory scripts and programs are written in C++, perl or python languages. The full rDock software package requires less than 50 MB of hard disk space and it is compilable in all Linux computers. Thanks to its design... -
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gogadget
A toolbox for interpretation and visualization of RNA-seq GO analysis
gogadget is an R package, and can help with the visualization and interpretation of GO enrichment analysis of RNA-seq data. It is developed especially for the use in combination with goseq. The functions that are available in this package are extensively described in the user's guide. To install the package download the "gogadget_2.1.tar.gz" file, open R and install with the following line: install.packages( "C:/your/directory/gogadget_2.1.tar.gz", repos = NULL, type="source... -
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ECEbuntu
ECEbuntu - a customized operating system designed for ECE
ECEbuntu is a customized operating system designed for electrical and computer engineering (ECE) students. ECEbuntu is targeted to universities and students as it represents an environment that contains more than 30 pre-installed software and packages all catering to undergraduate course-work in ECE. ECEbuntu supports a range of tools including programming tools, tools for circuit analysis and pcb design, mathematical and numerical analysis tools, network analysis and tools for microwave and... -
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xMWAS
An R package for integrative analysis of omics data
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MetabNet
An R package for network analysis of high-resolution metabolomics data
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With the world of work changed forever, it’s essential to manage your workplace and assets together to effectively create a high-performing environment. The Eptura experience combines the power of workplace management software with asset management, enabling you to effectively operate your building and facilitate hybrid work.
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autoFRK
Automatic Fixed Rank Kriging
An R package 'autoFRK' performs fixed rank kriging for (irregularly located) spatial data using a class of basis functions with multi-resolution features and ordered in terms of their resolutions. The model parameters are estimated by maximum likelihood (ML) and the number of basis functions is determined by Akaike's information criterion (AIC). For spatial data with either one realization or independent replicates, the ML estimates and AIC are efficiently computed using their closed-form... -
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This R package combines biological information (expression data) with theoretical information (miRNA target prediction databases) in order to obtain a curated list of potential miRNA-mRNA interaction pairs.
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R_poRe
An R package to enable visualisation of nanopore sequencing data
The Oxford Nanopore MinION is a revolutionary sequencer with a unique model of data delivery, requiring novel tools for the novice user. This package enables organisation and visualisation of MinION data on the MinION laptop -
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PhyIntOm
PhyloInteractOmics
The R package phyintom (pronounced as phantom) provides tools to perform phylotranscriptomic analyses of highthroughput gene expression data. -
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syngen
R package for inferring drug synergy interactions
The syngen package infer drug synergistic interactions by comparing each drug MOA, as inferred by the VIPER algorithm, with the Master Regulators of a defined phenotype -
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1. KRMM package (AVAILABLE ON R CRAN !)
R package which solves kernel ridge regression for various kernels
THE KRMM PACKAGE IS NOW AVAILABLE AT: https://cran.r-project.org/web/packages/KRMM/index.html -
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DiffCorr
an R package to analyze differential correlations biological networks
DiffCorr can explore differential correlations between different conditions in a modern post-genomics data including transcriptomics and metabolomics. DiffCorr package might prove useful for identifying various differential correlations and for detecting biomarker candidates. -
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We developed a systematic algorithmic solution for quantitative drug sensitivity scoring (DSS), based on continuous modeling and integration of multiple dose-response relationships in high-throughput compound testing studies. License: The DSS R-package is made available under the terms of the GNU General Public License, which means that the source code is freely available for use within other software, but if you alter the code and distribute it, you must make the new source code freely...
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EXCAVATOR2tool
Enhanced tool for detecting CNVs from whole-exome sequencing data
ATTENTION!!!!!ATTENTION!!!!!ATTENTION!!!!!ATTENTION!!!!! We recently published on BMC Genomics a novel software package, named XCAVATOR, for the identification of CNVs/CNAs from short and long reads whole-genome sequencing experiments (https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-017-4137-0). XCAVATOR is freely available at http://sourceforge.net/projects/xcavator/. EXCAVATOR2 is a collection of bash, R and Fortran scripts and codes that analyses Whole Exome Sequencing... -
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decd
R package for complex disease analysis
This is a R packages designed for complex disease when large scale expression data is available -
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SWire4R
An R package enabling R to interact with Stata for data exchange
Swire4R is an R package for exchanging data between R and Stata. SWire4R uses SWire for connecting R to Stata. SWire is a plugin for Stata >=13 which acts like a server: client applications can query SWire for interacting with Stata. SWire4R acts like a client application for Swire, providing the user with various basic functions for retrieving data from Stata and exporting data to Stata. SWire4R must be compiled by R. For more information about SWire, visit https://sourceforge.net/projects... -
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runjags
The 'runjags' R package and standalone JAGS extension module
This package provides high-level interface utilities for MCMC models via Just Another Gibbs Sampler (JAGS), facilitating the use of parallel (or distributed) processors for multiple chains, automated control of convergence and sample length diagnostics, and evaluation of the performance of a model using drop-k validation or against simulated data. Template model specifications can be generated using a standard lme4-style formula interface to assist users less familiar with the BUGS syntax... -
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An open-source implementation of our network-based target deconvolution approach, named target addiction score (TAS). License: The TAS R-package is made available under the terms of the GNU General Public License, which means that the source code is freely available for use within other software, but if you alter the code and distribute it, you must make the new source code freely available as well. This software is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY...
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Quake Shareware HD (High Definition)
Quake in High Definition
Quake in High Definition for DVD-ROM discs. Old YouTube video at: http://www.youtube.com/watch?v=qL2pJwINjSM -
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REDO
REDO - RNA Editing Detection in Organelle
REDO is a comprehensive application tool for identifying RNA editing events in organelles based on variant call results (VCF files). It is a suite of Perl scripts and can work easily and directly in any operating system installed Perl and R Environment. The stringent rule depended filters and statistical filters are used in REDO for reducing false positive rate. It can provide detailed annotations, statistics and figures for RNA editing sites. REDO also can detect RNA editing events in multiple... -
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JaccardClusters
An R package which clusters species based on COG content
This is an R package which creates clusters of species based on an input file showing which species contains which COG, in two columns. These kinds of data can be downloaded from the COG database at NCBI. The program also creates a matrix, a heat map showing clusters of species and a .sif file for Cytoscape.