Search Results for "genetic algorithm java" - Page 5
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Showing 907 open source projects for "genetic algorithm java"
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Formatomatic
Population Genetic File Creator and Converter
Formatomatic creates infiles for several population genetic analysis programs from csv, genepop or convert* (excel) files. It only handles diploid microsatellite data for now. I may eventually include other read or write formats (email me if there is some functionality you need and I will work on it if I have time). This program was initially developed for in-lab use to format microsatellite data extracted from a custom database system. I have made it available in case it is useful to others... -
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JSiteDescriptor
Binding site descriptor generation for SVM based classification.
A set of java programs that extract coordinate and chemical information from PDB files. The binding site regions are extracted using grid based scheme. For binding site, spatio-chemical descriptor is generated based on PocketMatch algorithm of Dr. Kalidas (author of this project too). -
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TimescapeGlobal
a space-time interpolation geostatistical tool
This software is a time-aware geostatistical tool. Including time variability adds further issues to the already complicated field of geostatistical interpolation. On the other hand, most of the distributions of variables used in Earth and environmental sciences show patterns of change over time, not only in space. This tool is a free, open-source software, based on a generalization of the Inverse Distance Weighted algorithm. It outputs three-dimensional, layered discrete models from which... -
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Genetic Oversampling Weka Plugin
A Weka Plugin that uses a Genetic Algorithm for Data Oversampling
Weka genetic algorithm filter plugin to generate synthetic instances. This Weka Plugin implementation uses a Genetic Algorithm to create new synthetic instances to solve the imbalanced dataset problem. See my master thesis available for download, for further details. -
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popt4jlib
Parallel Optimization Library for Java
popt4jlib is an open-source parallel optimization library for the Java programming language supporting both shared memory and distributed message passing models. Implements a number of meta-heuristic algorithms for Non-Linear Programming, including Genetic Algorithms, Differential Evolution, Evolutionary Algorithms, Simulated Annealing, Particle Swarm Optimization, Firefly Algorithm, Monte-Carlo Search, Local Search algorithms, Gradient-Descent-based algorithms, as well as some well-known... -
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The main purpose of CombiTagger is to read files generated by individual PoS taggers and use them to develop and evaluate combined taggers according to a given combination algorithm. http://aaai.org/ocs/index.php/FLAIRS/2009/paper/download/67/296
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DGRLVQ
Dynamic Generalized Relevance Learning Vector Quantization
Some of the usual problems for Learning vector quantization (LVQ) based methods are that one cannot optimally guess about the number of prototypes required for initialization for multimodal data structures i.e.these algorithms are very sensitive to initialization of prototypes and one has to pre define the optimal number of prototypes before running the algorithm. If a prototype, for some reasons, is ‘outside’ the cluster which it should represent and if there are points of a different... -
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JPIV
Particle Image Velocimetry
JPIV is a platform independent, graphical stand-alone application for Particle Image Velocimetry (PIV) written in Java. PIV is an optical technique for measuring fluid flow velocities. JPIV moved to GitHub. Please visit us at: https://eguvep.github.io/jpiv/ -
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PREESM provides a complete framework for fast prototyping. It generates a simulation and an optimized multiprocessor code from graph descriptions of algorithm and architecture. Please visit the project homepage at http://preesm.sourceforge.net.
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Point Symmetry Clustering
Point Symmetry Clustering Approach Using Differential Evolution
Implementation of Point Symmetry-based Automatic Clustering Approach Using Differential Evolution Using bug fixed KD tree nearest neighbor search from https://github.com/CristianDallos/kmeansclustering. (It is also modified to search for multiple nearest points instead only for one.) Used those academic works for algorithm implementation: http://cs.cug.edu.cn/teacherweb/gwy/Publication/ISICA-09.pdf http://www.isical.ac.in/~sanghami/ieeetkde_cameraready.pdf http... -
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Solid Python
A comprehensive gradient-free optimization framework written in Python
Solid is a Python framework for gradient-free optimization. It contains basic versions of many of the most common optimization algorithms that do not require the calculation of gradients, and allows for very rapid development using them. -
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This site hosts the source code for C++ version of the Broker for SBW, NOM module, advanced simulation suite, analysis applications and model editors.
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This application allow user to predict dissolution profile of solid dispersion systems based on algorithms like symbolic regression, deep neural networks, random forests or generalized boosted models. Those techniques can be combined to create expert system. Application was created as a part of project K/DSC/004290 subsidy for young researchers from Polish Ministry of Higher Education.
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BioPPSy
A biochemical property prediction system
Computationally predicts the pharmacokinetic properties of drug candidates using Quantitative Structure Property Relationships (QSPR) modelling. Assembles a set of tools and databases for predicting the physical properties of small molecules. The program models a given property's dependence on a collection of molecular and structural descriptors using a training set of molecules. Neural networks and support vector regression are available, as well as linear models. The models generated by... -
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SCEO
Single Cell Event Ordering Algorithm
This is an implementation of the Single Cell Event Ordering algorithm that was described in J. De Bie et al., "Single cell sequencing reveals the origin and the order of mutation acquisition in T-cell acute lymphoblastic leukaemia". Usage: java -jar SCEO.jar input=input.txt output=output.txt N=n with input = input file containing tab delimited matrix with for each gene a (named) row and for each cell a (named) column with the values 1=event present, 0=event absent, -1=NA output = output... -
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WebService::UMLSKS::Similarity::Java
A measure of semantic relatedness between medical terms using Java
This is a Java implementation of HSO measure of finding semantic relatedness. The measure is applied to UMLS source vocabularies and is used to find relatedness between medical terms. This implementation uses same algorithm as WebService::UMLSKS::Similarity, a CPAN perl open source package. -
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Latin Square Toolbox
Generates Latin squares and counts their transversals
The Latin Square Toolbox contains software tools for efficiently generating Latin squares and counting their transversals with various user-configurable options. This open source release aims to help educate folks on Latin squares and their important applications to cryptography. This version contains three tools: 0. Latin Square Generator (LSG) 1. Latin Square Transversal Counter (LSTC) 2. Latin Square Property Checker (LSPC) -
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Elements of Programming Interviews
Method stubs and test cases for Elements of Programming Interviews
This repository contains method stubs and tests of the problems from Elements Of Programming Interviews by Adnan Aziz, Tsung-Hsien Lee, and Amit Prakash. This book is also available in Python and C++. This repository contains solutions to problems from the book "Elements of Programming Interviews," focusing on interview preparation and algorithm practice. -
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crVCL PHP Framework
Rapid Application Development Framework for PHP
crVCL PHP Framework is based on PHP 5.4, Javascript 1.4 and CSS 2.1 (or higher). It provide classes and function for develop easy and fast web applications/webpages with graphical components. It give you more comfort in developing web applications with high usability. Rapid Application Development for PHP crVCL is inspired by JEDI VCL and Java Spring If you like the Project, donate it http://goo.gl/PYyiot for more visit the Website or take a look at the readme.txt More Videos... -
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JILRuntime/JewelScript
An object-oriented script language to embed in any application
A general purpose, object-oriented script language that compiles into code for a register based virtual machine. The language is quite similar to object-oriented high-level languages like Java and C#. The library is entirely self-sufficient and ANSI C compliant. It's main purpose is to be embedded in any application to allow automation of that application through scripting. An integrated C++ binding code generator allows you to create bindings for your application's classes in seconds... -
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Recursive Directory Removal
Recursive Directory Removal
https://github.com/mhisoft/rdpro -
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Swift AI
The Swift machine learning library
Swift AI is a high-performance deep learning library written entirely in Swift. We currently offer support for all Apple platforms, with Linux support coming soon. Swift AI includes a collection of common tools used for artificial intelligence and scientific applications. A flexible, fully-connected neural network with support for deep learning. Optimized specifically for Apple hardware, using advanced parallel processing techniques. We've created some example projects to demonstrate the... -
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Format-Preserving Encryption
Format-Preserving Encryption Library for Java
This package implements the FF1, FF3, and FFX algorithms and the A2 and A10 parameter sets for format-preserving encryption. The FF1 and FF3 methods for format-preserving encryption are implementations of NIST Special Publication 800-38G, Recommendation for Block Cipher Modes of Operation: Methods for Format-Preserving Encryption. The FFX algorithm and A2 and A10 parameter sets are implementations of "The FFX Mode of Operation for Format-Preserving Encryption," by Mihir Bellare, Phillip... -
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OWL Machine Learning
Machine learning algorithm using OWL
Feature construction and selection are two key factors in the field of Machine Learning (ML). Usually, these are very time-consuming and complex tasks because the features have to be manually crafted. The features are aggregated, combined or split to create features from raw data. This project makes use of ontologies to automatically generate features for the ML algorithms. The features are generated by combining the concepts and relationships that are already in the knowledge base,... -
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GAVGA
A Genetic Algorithm for Viral Genome Assembly
GAVGA is a Genetic Algorithm for Viral Genome Assembly. It can be used in the assembly of small genomes, like viral ones.
