Search Results for "diagnostics" - Page 4
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Showing 161 open source projects for "diagnostics"
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DaMold
a data mining platform for variant annotation and visualization.
DaMold a powerful, integrated, web-based, and user-friendly tool to filter, annotate, cross-link, and visualize NGS, Sanger, and hotspot variants. It is easy-to-use software, which provides flexible input options and accepts variants in VCF and BED formats. For each variant DaMold predicts the variant effect, such as codon change, and amino acid change. Furthermore, it cross-links each variant with more than 30 clinically relevant public databases, which contain already reported SNPs and... -
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runjags
The 'runjags' R package and standalone JAGS extension module
This package provides high-level interface utilities for MCMC models via Just Another Gibbs Sampler (JAGS), facilitating the use of parallel (or distributed) processors for multiple chains, automated control of convergence and sample length diagnostics, and evaluation of the performance of a model using drop-k validation or against simulated data. Template model specifications can be generated using a standard lme4-style formula interface to assist users less familiar with the BUGS syntax... -
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EMoP
EC-Earth Monitoring Package
EMoP is a collection of scripts to produce a wide variety of diagnostics and plots of the EC-Earth climate model and the IFS atmospheric model. -
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ClinQC
ClinQC: A tool for quality control of Sanger and NGS data in clinic
ClinQC is an integrated and user-friendly pipeline for quality control, filtering and trimming of Sanger and NGS sequencing data for hundred to thousands of samples/patients in a single run in clinical research. It can analyze raw sequencing data and produces unified output as FASTQ files per sample/patient with Sanger quality encoding. First, ClinQC convert input read files from their native formats to a common FASTQ format and remove adapters, and PCR primers. Next, it split barcoded... -
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MutAid
MutAid: Sanger and NGS based pipeline for mutation screening.
MutAid: Sanger and NGS based integrated pipeline for mutation identification, validation and annotation in molecular diagnosis. MutAid is an integrated pipeline for mutation screening in clinical research. It can analyze Sanger sequencing and NGS data from raw reads to list of annotated mutation list. MutAid can analyze and interpret raw sequencing data produced by Sanger or several NGS sequencing platforms. It performs format conversion, base calling, quality trimming, filtering, read... -
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This project will focus on the development of tools and analyses for the diagnosis of convergence in Markov Chain Monte Carlo (MCMC) processes, with a main focus on inference of phylogeny using Bayesian statistical methods.
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quban
Quban is a usenet binary newsgrabber for Linux
News August 2nd 2015 Quban version 0.7.5 now available from the website: http://quban.sourceforge.net/ . Please read the release notes at http://quban.sourceforge.net/releases.php#0.7.5 Quban is a Qt4 program to download encoded articles from Usenet, originally forked from Klibido 0.2.5. It supports multiple servers, multiple download threads per server plus automatic joining, decoding, repair and unpacking of articles. -
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logras
logfile read and search utility
Single stream viewer for logging output spread over multiple (large) files, terminal based, for diagnostics use over e.g. slow ssh connections. -
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GASiC
Genome Abundance Similarity Correction
One goal of sequencing based metagenomic analysis is the quantitative taxonomic assessment of microbial community compositions. However, the majority of approaches either quantify at low resolution (e.g. at phylum level) or have severe problems discerning highly similar species. Yet, accurate quantification on species level is desirable in applications such as metagenomic diagnostics or community comparison. GASiC is a method to correct read alignment results for the ambiguities imposed... -
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Torque Log Viewer and Analyzer
Torque OBD Log Viewer and Analyzer Software for Windows
Torque Log Viewer and Analyzer Software (aka Torque Log View and Analyze) is developed using Qt5 environment and Qwt library to view and analyze Torque (OBD diagnostics software for android etc.) csv formatted OBD log files. Dowload Windows binary archive if don't wanna mess with Qt,Qwt and source code. Feedbacks are appreciated :) Contact: hyetkintr@gmail.com -
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Z4 Phreak Tools 2.3
Modify Request and Response Header
Version 2.3 Pro Edition is available (Mar/01/2015) What's new in version 2.3? - Fixed bugs Traffic - Fixed bugs Dialer - Fixed bugs Set Proxy IDM - Change Proxy Server (with listview) - Fixed bugs Query (add use query mode only) - Add New User-Agent to Query (SonyEriccson, NOKIA, Opera Mini, and Custom) - SMS (Create, Inbox, Outbox, Draft, Kontak) - Diagnostics Modem (Operator, Speed, RSSI, MCC, MNC, LAC, Cell ID, QoS, Sent, Recieved) - Set Network Type modem (3G Only, 3G... -
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An implementation of the Kernel-based Orthogonal Projections to Latent Structures (K-OPLS) method for MATLAB and R. The supplied functionality includes e.g. cross-validation, kernel parameter optimization, model diagnostics and plot tools.
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PC Solution
Retrieve your PC info and easy access to important tools
... Device Manager Disk Cleanup Disk Management DirectX Diagnostics Ease of Access Event Viewer Registry Editor Resource Monitor Shared Folders System Properties System Restore Task Manager User Accounts Windows® Backup Windows® Features Windows® Firewall Windows® Services -
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InfiniDB is now hosted on github.
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DiagSim
Diagnostics simulation for particle accelerators
DiagSim is a collection of Python modules for simulating beam diagnostics in particle accelerators, at the moment only cavity BPMs, with other types of BPMs and other diagnostics to follow. Or so we think. Anyway, we use beam data exported from beam trackers, trace the signals through the diagnostics and processing, so that they can be processed as real data, and the input and measured beam parameters can be compared. -
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LParted
Free complete partition tools collection
Free recovery, partitioning, benchmarking, erasing solution. Clone of Parted Magic. Contains all tools from PM and much more. Based on Ubuntu with LXDE WM and working apt system. Everything UNDER 700mb. -
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ActiveGEM contains a set of perl/Tk graphical interfaces for the GEMPAK meteorological diagnostics and plotting package. These research-oriented interfaces provide easy access to low-level GEMPAK functions and allow for the maximum possible flexibility.
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OOBD supports a self-programable Tool for Vehicle Onboard Diagnostics (OBD) for various platforms like the Windows-Desktop, mobile Phones and Smartphones Please note that we are actual moving this project over to oobd.googlecode.com. The software source code repository is already moved, other areas will follow.
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Disk Diagnostic
Disk diagnostic for disk/controler/driver testing
This is a cli disk diagnostic that runs under Windows, Linux and DOS/BIOS. It is a traditional disk diagnostic in the style of diagnostics going back into the 1960's and the first disk drives. Although CLI driven, I have found it more useful that many other types of diagnostics for disk, controller and driver development than GJI based diagnostics. The command forms are terse, and it allows either use as an immediate mode debugger of drives or it can be used to form full testing scripts... -
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galprop_propel
GALPROP update for accurate propagation calculation
... parameter file. A test GALDEF file with these parameters is galdef_54_reltest09; the diagnostics document the accuracy of the solution. A full explanation is given in the GALPROP Explanatory Supplement http://www.mpe.mpg.de/~aws/galprop_explanatory_supplement.pdf Thanks to Deepak Khurana for requesting and testing this update. Now replaced by this project: http://sourceforge.net/projects/galprop where further updates can be found. -
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A program to generate match fixture lists for numbered teams. Intended primarily for the Oxford University Alternative Ice Hockey sessions, but can be applied to similar.
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obdix
obd diagnostics with linux
having bought an obd adapter my last laptop with an xp partition died. I couldn't get the existing programs to run an decided to write my own. The last Git version has been rewritten and runs with ruby 1.9 now. If you have a AGV4000 OBD-Adapter the programm should be able to display most of the 0100 codes -
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Herbie - Diagnostics
herbie is a small and beautiful cpu monitoring software
Herbie is a CPU monitoring software that perfectly integrates to the desktop. In addition to a performance history, colors & font size are customizable. You can set the background transparent and lock it so that mouse events pass through. -
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eSONIA
Embedded Service-Oriented Monitoring, Diagnostics and Control
eSONIA stands for Embedded Service-Oriented Monitoring, Diagnostics and Control: Towards the Asset-Aware and Self-Recovery Factory -
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MBMLog
Log collector for FortiGate units (v4 MR3)
MBM-Log allows to look deeply in collected logs (not only Top 10). All charts are generated on demand. You can easily filter data. MBM-Log can help you with FortiGate diagnostics via SSH (built in commands) Java GUI application.