Showing 2943 open source projects for "algorithm"

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  • 1
    KMC-KaiC

    KMC-KaiC

    Kinetic Monte Carlo simulation of the in-vitro Kai Circadian clock

    This code is a dedicated Kinetic Monte Carlo (KMC) algorithm which simulates a model of the post-translational Kai circadian clock. The code allows you to simulate the Kai system at the level of individual KaiC hexamers and monomers and explicitly tracks the turnover of every ATP nucleotide. Apart from ATP hydrolysis, all reactions obey detailed balance. The application of the code is described in our article titled "A Thermodynamically consistent model of the post-translational Kai circadian clock", which is freely available at the open access journal PLOS Computational Biology: https://doi.org/10.1371/journal.pcbi.1005415 *UPDATE* We made a fully reversible version of our model, including the inverse reactions for ATP hydrolysis. ...
    Downloads: 23 This Week
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  • 2
    Machine-Learning-Flappy-Bird

    Machine-Learning-Flappy-Bird

    Machine Learning for Flappy Bird using Neural Network

    ...The neural network receives input features representing the bird’s position relative to the next obstacle and determines whether the bird should flap or remain idle. Over successive generations, a genetic algorithm evolves the neural networks by selecting high-performing agents and recombining their parameters to produce improved offspring. This process allows the AI agents to gradually learn better strategies for navigating the obstacles and surviving longer in the game environment.
    Downloads: 0 This Week
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  • 3
    ROXter

    ROXter

    The easiest way to encypt files or text

    This is a ROXster. A program that encrypts files and text with an algorithm based on XOR. You can use it to encrypt your files or text fast and easy. Enjoy!
    Downloads: 1 This Week
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  • 4

    file digest

    A command-line utility for calculating and verifying file checksums.

    Digest is a command-line utility which can be used to calculate and verify checksums of any files, similar to md5sum or RHash, but using modern hash algorithms. Supported algorithms: BLAKE, BLAKE2, Grøstl, JH, Kupyna, MD5, SHA-1, SHA-2, SHA-3, Skein, SM3, Streebog, Whirlpool. Usage: digest [-c] <algorithm> <filename(s)> For example, if you want to calculate the checksums using skein512/256 algorithm, use this command: digest skein512/256 * > checksums.skein To verify the checksums: digest -c skein512/256 checksums.skein You can get a full list of supported algorithms and test the performance of different algorithms on your PC using the command: digest test <iterations> <filename> This will calculate hash sum of <filename> multiple times (number of times is specified by <iterations>) and output the results with precise timings. ...
    Downloads: 3 This Week
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  • 5

    GAVGA

    A Genetic Algorithm for Viral Genome Assembly

    GAVGA is a Genetic Algorithm for Viral Genome Assembly. It can be used in the assembly of small genomes, like viral ones.
    Downloads: 0 This Week
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  • 6

    Shortest Path Graph A star

    finds the sortest path on the directed graph using A* algorithm.

    It is the implementation of the A* algorithm for directed graph. Additionally, the implementation of the Graph is provided. For visualization of the graph and the results of the A* algorithm the data are exported in GraphViz (Graph Visualization Software) format: http://www.graphviz.org/ Various exemplary solutions are provided. See also my other two projects related to A* algorithm: https://sourceforge.net/projects/path-finder-qt/ https://sourceforge.net/projects/a-star/
    Downloads: 0 This Week
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  • 7
    casync

    casync

    Content-addressable data synchronization tool

    ...Let's call this directory a "chunk store". At the same time, generate a "chunk index" file that lists these chunk hash values plus their respective chunk sizes in a simple linear array. The chunking algorithm is supposed to create variable, but similarly sized chunks from the data stream.
    Downloads: 1 This Week
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  • 8

    absens

    game of nil or eternity

    Simple or complex game
    Downloads: 0 This Week
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  • 9

    OWL Machine Learning

    Machine learning algorithm using OWL

    Feature construction and selection are two key factors in the field of Machine Learning (ML). Usually, these are very time-consuming and complex tasks because the features have to be manually crafted. The features are aggregated, combined or split to create features from raw data. This project makes use of ontologies to automatically generate features for the ML algorithms. The features are generated by combining the concepts and relationships that are already in the knowledge base,...
    Downloads: 0 This Week
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  • 10
    This is an IQM plugin to compute the PPI index for binary digital images. This index represents the compactness of an object. PPI is computed with the FFI index and the Lacunarity using the ToW algorithm: PPI = FFI^(Ltw) For FFI, please see: https://sourceforge.net/projects/iqm-plugin-ffi/ Andronache etal. Fractal analysis for studying the evolution of forests, Chaos, Solitons & Fractals, 2016, Vol 91, 310-318. For Tug of War Lacunarity, please see: Reiss, Lemmerer, Hanslmeier, Ahammer Tug-of-War Lacunarity-A Novel Approach for Estimating Lacunarity. ...
    Downloads: 0 This Week
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  • 11

    Path Finder Qt

    finds the sortest path on the square board. GUI is implemented in Qt.

    The program demonstrates the usage of the A* algorithm to find the shortest path. It searches the shortest path between source piece and target piece on the rectangular board. On the board the obstacles (wall) can be constructed. In addition to the algorithm, the GUI is provided. The GUI is written in Qt. Using the GUI, one can construct and move interactively the obstacles on the board.
    Downloads: 0 This Week
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  • 12
    The purpose of this program is to provide the user with a convenient algorithm for automatic Independent Component (IC) selection with respect to the contributions of the ICs to a certain event-related brain potential (ERP). www.jan-wessel.de
    Downloads: 0 This Week
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  • 13

    CUBiBit

    Tool to search binary biclusters on CUDA-enabled GPUs

    ...This tool receives as input a file with ARFF extension that contais the binary values of m attributes and n samples and returns a file with the biclustering information. It is able to exploit the parallel capabilities of manycore NVIDIA GPUS. It also makes use of C++11 multithreading support to accelerate one phase of the algorithm on several CPU cores.
    Downloads: 2 This Week
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  • 14

    RElt

    calculates overlap, kinetic integrals for numerical atomic orbitals.

    The efficient algorithm calculating the overlap and the kinetic integrals for the numerical atomic orbitals is implemented. The described algorithm exploits the properties of the prolate spheroidal coordinates. The overlap and the kinetic integrals in R^3 are reduced to the integrals over the rectangular domain in R^2, what substantially reduces the complexity of the problem.
    Downloads: 0 This Week
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  • 15

    WebService::UMLSKS::Similarity::Java

    A measure of semantic relatedness between medical terms using Java

    This is a Java implementation of HSO measure of finding semantic relatedness. The measure is applied to UMLS source vocabularies and is used to find relatedness between medical terms. This implementation uses same algorithm as WebService::UMLSKS::Similarity, a CPAN perl open source package.
    Downloads: 0 This Week
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  • 16
    JView is a command line client for MyWebProject SOAP Web Service. Usage: param 1: endpoint, param 2: remote folder, param 3: algorithm, param 4: modeParam, param 5: userName, param 6: password, param 7: outputFile Example: java -jar JView2.jar http://davidesestili.ddns.net:8080/MyWebProjectLogin/services/GenerateAndDownloadHashWSLogin /home/dsestili82/ SHA-512 no-subfolders davide davide /home/davide/Scaricati/mozilla.sha512 (Currently unavailable) Source code available on https://github.com/davidesestiliwork/JView
    Downloads: 4 This Week
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  • 17
    DMTK

    DMTK

    Microsoft Distributed Machine Learning Toolkit

    The Microsoft Distributed Machine Learning Toolkit (DMTK) is an open-source framework created to support scalable machine learning across distributed computing environments. Developed by Microsoft Research, the toolkit provides infrastructure and algorithms designed to train large models efficiently on clusters of machines rather than a single system. At its core is a parameter-server architecture called Multiverso, which manages model parameters and synchronizes updates across distributed...
    Downloads: 3 This Week
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  • 18
    Solid Python

    Solid Python

    A comprehensive gradient-free optimization framework written in Python

    Solid is a Python framework for gradient-free optimization. It contains basic versions of many of the most common optimization algorithms that do not require the calculation of gradients, and allows for very rapid development using them.
    Downloads: 1 This Week
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  • 19
    rhythm

    rhythm

    Rhythm Generator (Naive Interference Algorithm)

    This portable program can help musician discover sequences of rhythms.
    Downloads: 2 This Week
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  • 20
    Seq2seq Chatbot for Keras

    Seq2seq Chatbot for Keras

    This repository contains a new generative model of chatbot

    This repository contains a new generative model of chatbot based on seq2seq modeling. The trained model available here used a small dataset composed of ~8K pairs of context (the last two utterances of the dialogue up to the current point) and respective response. The data were collected from dialogues of English courses online. This trained model can be fine-tuned using a closed-domain dataset to real-world applications. The canonical seq2seq model became popular in neural machine...
    Downloads: 0 This Week
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  • 21
    flexselect: a jQuery plugin

    flexselect: a jQuery plugin

    jQuery plugin that turns regular select boxes into Quicksilver

    FlexSelect is a jQuery plugin that turns select boxes into flex-matching incremental-finding controls. Flex matching a few keystrokes against longer strings is a boon in productivity for typists. Applications like Quicksilver, LaunchBar, and Launchy have made this method of keyboard entry a popular one. It's time to bring this same functionality to web controls. FlexSelect does that for select boxes.
    Downloads: 2 This Week
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  • 22
    EntOpt Layout

    EntOpt Layout

    Relative entropy optimization network layout plugin

    The goal of this project is to implement a graph layout / network visualization algorithm as a Java plugin for Cytoscape (http://cytoscape.org/), using a recently published relative entropy optimization based method, called Unified Data Representation (Kovács IA et al. Sci Rep. 2015). If you are using the plugin, please cite: Ágg B, Császár A, Szalay-Bekő M, Veres DV, Mizsei R, Ferdinandy P, Csermely P and Kovács IA (2019) The EntOptLayout Cytoscape plug-in for the efficient visualization of major protein complexes in protein-protein interaction and signalling networks, Bioinformatics 35(21):4490-4492 https://academic.oup.com/bioinformatics/article/35/21/4490/5475596 Our detailed Tutorial on the use of the plugin: https://suopte.com/entopt_2_1_tutorial_20200518.pdf A video about the version 2.1: http://suopte.com/entopt_2_1_tutorial_video.mp4 Don't hesitate to send any questions, comments or bug reports also to agg.bence {at} med.semmelweis-univ.hu.
    Downloads: 0 This Week
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  • 23

    Machine Learning:Perceptron

    Minimal version of the perceptron algorithm.Coded the simpler way.

    A minimal version of the perceptron algorithm is implemented in C#. Coded for ease of understanding the referred to algorithm. Enter your info-press the learn button-then type in new info which the program will try and recognnise. There are some typos in the text displayed-but the code is correct.
    Downloads: 0 This Week
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  • 24
    Deep Photo Style Transfer

    Deep Photo Style Transfer

    Code and data for paper "Deep Photo Style Transfer"

    Deep Photo Style Transfer is an implementation of the algorithm described in the paper “Deep Photo Style Transfer” (arXiv 1703.07511). The software allows users to transfer the style of one photograph to another while preserving photorealism and semantic consistency. It relies on semantic segmentation masks to guide style transfer (so that e.g. sky maps to sky, building maps to building), and uses a matting Laplacian regularization term to ensure smooth transitions.
    Downloads: 0 This Week
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  • 25
    MUSE

    MUSE

    A Multi-algorithm Collaborative Structure-prediction Environment

    MUSE is short for Multi-algorithm-collaborative Universal Structure-prediction Environment, which was developed for easy use in structure prediction of materials under ambient or extreme conditions, such as high pressure. It was written in Python and organically combined the multi algorithms including the evolutionary algorithm, the simulated annealing algorithm and the basin hopping algorithm to collaboratively search the global energy minimum of materials with the fixed stoichiometry. ...
    Downloads: 0 This Week
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