Search Results for "principal component analysis" - Page 3
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Showing 130 open source projects for "principal component analysis"
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Ub_ISAP
A streamlined UNIX pipeline for mining unique viral vector integration
Background: The analysis of viral vector genomic integration sites is an important component in assessing the safety and efficiency of patient treatment using gene therapy. Alongside this clinical application, integration site identification is a key step in the genetic mapping of viral elements in mutagenesis screens that aim to elucidate gene function. We have developed a UNIX-based vector integration site analysis pipeline (Ub-ISAP) that utilises a UNIX-based workflow for automated... -
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OovAide
C++, Java IDE with auto class, sequence, zone, dependency, diagrams
The OovAide project used to be named oovcde. Searching the web will bring up more information about oovcde at this time. The OovAide project is a C++ or Java analysis IDE for Windows or Linux with an automated multi-tasking build system, cross compiler support, an analysis tool based on CLang that creates UML class, component, sequence as well as zone and portion diagrams from C++ or Java source, static analysis and test coverage. The diagrams allow navigation through the source code... -
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A Matlab software routine to perform Principal Component Analysis using Covariance, Correlation or Comedian as the criterion. Though, initially developed for experiments related to fretting wear but can be effectively used to interpret experimental data from any field. The attached files contain source code as well as a sample MATLAB (.mat) data file of 13 variables. It could be replaced to the data file of your choice. The code is open source but you are requested to give credits if used...
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Zika-RNAseq-Pipeline
An open RNA-Seq data analysis pipeline tutorial
... configuration overhead. The pipeline enables the extraction of knowledge from typical RNA-seq studies by generating interactive principal component analysis (PCA) and hierarchical clustering (HC) plots, performing enrichment analyses against over 90 gene set libraries, and obtaining lists of small molecules that are predicted to either mimic or reverse the observed changes in mRNA expression. -
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Kokpit-db is an integrated monitoring, comparison and performance analysis software for Oracle databases. It can compare and monitor versions 8i, 9i, 10g and 11g. Supports standby databases and ASM instances. GUI and command line interfaces available
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Libre Mechanics
Open Knowledge on engineering development.
... today. The four principal lines of work are: Design Analysis and Simulation Automation and Robotics Development -
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This code uses a technique originally developed for facial recognition to describe shear stress distributions in open channel flow. In this approach, a synthetic database of images representing normalized shear stress distributions is formed from the training data set using recurrence plot analysis. A face recognition algorithm is then employed to synthesize the recurrence plots and transform the original database into short-dimension vectors containing similarity weights proportional...
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Tool support for creating FMC* diagrams [Block diagrams, Petri nets, Entity-Relationship diagrams (ERD)] in MS-Visio 2000 and newer. Features: stencils, consistency checking, Petri net simulation, exporter e.g. pdf, ... *Fundamental Modeling Concepts A stripped down version of the stencil set is available for TAM (Technical Architecture Modeling of SAP). This set uses UML notation and contains Block, Activity, Sequence, State, Class, and Component diagrams. It doesn't contain Simulation...
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Face recognition PCA
Face recognition using Principal component Analysis Algorithm
A Face recognition Dynamic Link Library using Principal component Analysis Algorithm -
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... implemented units are then automatically integrated with the rest of the library. The base of available algorithms is steadily increasing and includes signal processing methods (Principal Component Analysis, Independent Component Analysis, Slow Feature Analysis), manifold learning methods ([Hessian] Locally Linear Embedding), several classifiers, probabilistic methods (Factor Analysis, RBM), data pre-processing methods, and many others.
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RDA Toolbox
MATLAB tool for analysis of Raman spectra.
Provides principal component analysis, discriminant analysis, peak analysis, and clustering tools powered by MATLAB in an easy-to-use interface for the interpretation of Raman spectroscopy data. -
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MathOCR
A scientific document recognition system
MathOCR is a printed scientific document recognition system. MathOCR is still in the pre-alpha stage, recognition result may not be good enough for practical purposes. MathOCR is a printed scientific document recognition system written in pure Java. MathOCR has the functionality of image preprocessing, layout analysis and character recognition, especially the ability to recognize mathematical expression. MathOCR can work do not depends on other OCR software. -
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GI-ICA
Matlab implementation of GI-ICA and PEGI
This is a matlab implementation of the GI-ICA algorithm for ICA in the presence of an additive Gaussian noise. The algorithm is discussed in the paper "Fast Algorithms for Gaussian Noise Invariant Independent Component Analysis" by James Voss, Luis Rademacher, and Mikhail Belkin. -
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# ASPI Kit - Adaptive Identification and Control Software This software is under development by the ASPICC group. Its purpose is to allow users to learn and experiment the use of Neural Networks (NN's) and related Computational Intelligence algorithms on their own data. Users can upload their own data and experiment with various algorithms of various setups to see how the algorithms performs on their data. Users can also investigate and familiarize themselves with the Python code of...
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oovcde
C++ analysis IDE with auto class, sequence, zone, dependency, diagrams
The Oovcde project has been renamed to OovAide. Downloades from either location work for now. The Oovcde project is a C++ IDE for Windows or Linux with an automated multi-tasking build system, cross compiler support, an analysis tool based on CLang that creates UML class, component, sequence as well as zone and portion diagrams from C++ source, static analysis and test coverage. The diagrams allow navigation through the source code, and can be edited manually and saved as .SVG files... -
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Visualg 3.0
Visualg versão 3.0.5.6 (última de revisão 20/08/2015)
O VISUALG 3.0.5.6 (último) está com novos recursos, e nova aparência, e que pode ser trocada, entrando no MANUTENÇÃO/CONFIGURAÇÃO/PELES... Mas, atenção: Copie a sub-pasta SKIN's que está dentro da Pasta VISUALG3 para o drive C:\. Na raiz de seu HD [ drive C: (principal) ] , ficando assim: C:\Skins "caso vocês não consigam trocar as roupagens (peles) do programa. Usem com sabedoria ! Bons estudos ! Para contacto mandem um E-mail para: professor.antonio.nicolodi@gmail.com -
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principal component analysis
This program demonstrates the application of principal component analy
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This project provides a Fortran90 library and a python module for singular spectrum analyses such as PCA/EOF or MSSA. It is intended for people interested, for example, in analysing climate or financial variability.
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ProC 3.0
smart Workflow Engine
ProC 3.0 is a scientific workflow engine to build, manage and execute workflows (pipelines) in heterogeneous environments, supporting GRID and other means of parallel processing. It includes a data management component (DMC) to transparently access databases for storage of results and automatically adds metadata to track the processing of data products, so that at every time a full processing history is available. The software was developed and used within the ESA Planck satellite mission. -
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coan
"The C preprocessor chainsaw"
Coan is a software engineering tool for analysing preprocessor-based configurations of C or C++ source code. Its principal use is to simplify a body of source code by eliminating any parts that are redundant with respect to a specified configuration. -
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Pathomx
Workflow-based data analysis built on IPython
Pathomx is a workflow-based tool for the analysis and visualisation of experimental data. Initially created as a tool for metabolomic data analysis is has been extended and can now be used for any scientific and non-scientific data analysis. -
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The BioNLP UIMA Component Repository provides UIMA wrappers for novel and well-known 3rd-party NLP tools used in biomedical text prosessing, such as tokenizers, parsers, named entity taggers, and tools for evaluation.
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NGSbinningpytools
Python tools for binning NGS scaffolds to various genomes.
Next generation sequencing has opened new avenues for sequencing prokaryotes which were difficult or either impossible to culture. Now, it is possible to sequence all organisms present in a metagenomic community. However, a critical problem is to determine the host organism for each genomic fragment present in the dataset. This project provides the computational tools for assigning the organismal identity for each genomic scaffold in the given dataset. For more detailed documentation... -
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giServer
giServer the easy to use and extensible batch and integration server
The giServer is an easy-to-use integration server for process automation and event-driven or scheduled execution of batch jobs. Instead of using complex XML configuration files an elaborate GUI for batch job management is included. Some possible usage scenarios are: - Automatic processing of incoming data files - Big Data applications - Process automation - Data Mining/Aggregation applications - Automatic Reporting - Processing and analysis of database records