Search Results for "bioinformatics with python cookbook" - Page 3

CoCOOT is an extended collaboration system of COOT(Crystallographic Object Oriendted Toolit). It operates an add-on of original Coot. It enables to collaboration through internet.

Cyrille is an workflow management system aimed at high throughput pipelines in Bioinformatics.

A lightweight, browsing-based, 100% Python, federated data integration framework. Users may create custom schemas for disparate sources, query and expand results across sources to find related data; for use in fields such as bioinformatics and datamining

A Python library bringing together utilities I've written over the years for work in bioinformatics and biostatistics, which should be generally applicable outside these fields as well. Focuses on string processing, DBI, and math.

DIY Genomics is an open source bioinformatics consortium intended to bring a collection of tools and libraries into the hands of small scale genomics labs for the process of sequence assembly and annotation. Projects include DIYA, MGAP, CRISPR, and DIYGV

pygr is a bioinformatics toolkit for sequence analysis and comparative genomics. pygr is highly scalable (e.g. one can easily query multi-genome alignments) and easy to use. Please see our new project page and wiki at http://code.google.com/p/pygr.

The dispatcher provides loosely-coupled message passing between Python objects (signal senders and receivers). It began as one of the highest-rated recipes on the Python Cookbook website

PARs is a bioinformatics tool for the analysis of cis-regulatory DNA sequences. Composed of two parts: a suite of sequence analysis algorithms for predicting cis-binding sites in DNA sequences and a GUI for visualisation and exploration of the results.

E-Cookbook is an electronic cookbook or recipe organizer. It will replace the old tattered cookbook in your kitchen. Easily decide on something to make for dinner, or see what you can make based on the ingredients in your refrigerator.

A project to develop an integrated and open bioinformatics framework and environment.

SeqFreed is a bioinformatics desktop. It provides efficient access to sequence data and gene features, a customizable command line interface to locally installed bioinformatic tools and flexible display of either text or images in different page modes.

openSputnik is a robust distributed platform for massive scale precalculation of genetic and genomic data using contemporary bioinformatics methods. Annotated DNA, RNA and protein sequences are stored as binary objects in a variery of relational database

Disease Gene Profiler (DGP) comprises of a set of (bioinformatics) tools that can be used to identify the genes underlying susceptibility to common multifactorial diseases (such as diabetes, asthma and cancer) using freely available datasources.

Network Visualization is a mature part of computer science that is enjoying a good deal of growth, partially fueled by Bioinformatics. Network is a synonym for Graph, and both refer to a collection of nodes and edges.

BlueBook.. The Value of Code. A Zope product to provide a code snippet repository. Provides a "learn by example" environment, and cut&paste type code sharing. It is a "cookbook" in which snippets are "Recipes" that contain code and can be rated.

This site was created because we believe good friends and good food always pair well together. Our goal is to make it easy for you to create, organize, and share your favorite recipes with your friends, family, and communities. You can invite friends to add recipes or use recipes right from the site and once your cookbook is completed you can share with a select few or with everyone! You can even send it to print and have it delivered to your front door.

Code repository for the Laboratory for Genome Bioinformatics at Texas A&M. The LGB project was initiated primarily to support biologists at Texas A&M needing help with bioinformatics in order to use new genomic technologies.

Louie provides Python programmers with a straightforward way to dispatch signals between objects in a wide variety of contexts. It is based on PyDispatcher, which in turn was based on a highly-rated recipe in the Python Cookbook.

Python module to interface mzML data in Python based on cElementTree with additional tools for MS-informatics. CITATION Please cite us when using pymzML for your publications. Bald, T., Barth, J., Niehues, A., Specht, M., Hippler, M., & Fufezan, C. (2012). pymzML - Python module for high throughput bioinformatics on mass spectrometry data. Bioinformatics, 1-2. doi: 10.1093/bioinformatics/bts066

generic makefiles for use in bioinformatics