Search Results for "bioinformatics with python cookbook"
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Showing 10 open source projects for "bioinformatics with python cookbook"
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Llama Cookbook
Solve end to end problems using Llama model family
The Llama Cookbook is the official Meta LLaMA guide for inference, fine‑tuning, RAG, and multi-step use-cases. It offers recipes, code samples, and integration examples across provider platforms (WhatsApp, SQL, long context workflows), enabling developers to quickly harness LLaMA models -
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OpenAI Cookbook
Examples and guides for using the OpenAI API
openai-cookbook is a repository containing example code, tutorials, and guidance for how to build real applications on top of the OpenAI API. It covers a wide range of use cases: prompt engineering, embeddings and semantic search, fine-tuning, agent architectures, function calling, working with images, chat workflows, and more. The content is primarily in Python (notebooks, scripts), but the conceptual guidance is applicable across languages. -
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Granite TSFM
Foundation Models for Time Series
...The repository focuses on end-to-end workflows: loading data, building datasets, fine-tuning forecasters, running evaluations, and serving models. It documents the currently supported Python versions and points users to where the core TSFM models are hosted and how to wire up service components. Issues and examples in the tracker illustrate common tasks such as slicing inference windows or using pipeline helpers that return pandas DataFrames, grounding the library in day-to-day time-series operations. The ecosystem around TSFM also includes a community cookbook of “recipes” that showcase capabilities and patterns. ... -
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AlphaFold 3
AlphaFold 3 inference pipeline
AlphaFold 3, developed by Google DeepMind, is an advanced deep learning system for predicting biomolecular structures and interactions with exceptional accuracy. This repository provides the complete inference pipeline for running AlphaFold 3, though access to the model parameters is restricted and must be obtained directly from Google under specific terms of use. The system is designed for scientific research applications in structural biology, biochemistry, and bioinformatics, enabling... -
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5
audioFlux
A library for audio and music analysis, feature extraction
A library for audio and music analysis, and feature extraction. Can be used for deep learning, pattern recognition, signal processing, bioinformatics, statistics, finance, etc. audioflux is a deep learning tool library for audio and music analysis, feature extraction. It supports dozens of time-frequency analysis transformation methods and hundreds of corresponding time-domain and frequency-domain feature combinations. It can be provided to deep learning networks for training and is used to... -
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DGL
Python package built to ease deep learning on graph
Build your models with PyTorch, TensorFlow or Apache MXNet. Fast and memory-efficient message passing primitives for training Graph Neural Networks. Scale to giant graphs via multi-GPU acceleration and distributed training infrastructure. DGL empowers a variety of domain-specific projects including DGL-KE for learning large-scale knowledge graph embeddings, DGL-LifeSci for bioinformatics and cheminformatics, and many others. We are keen to bringing graphs closer to deep learning researchers.... -
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LLaMA Models
Utilities intended for use with Llama models
This repository serves as the central hub for the Llama foundation model family, consolidating model cards, licenses and use policies, and utilities that support inference and fine-tuning across releases. It ties together other stack components (like safety tooling and developer SDKs) and provides canonical references for model variants and their intended usage. The project’s issues and releases reflect an actively used coordination point for the ecosystem, where guidance, utilities, and... -
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Armadillo
fast C++ library for linear algebra & scientific computing
* Fast C++ library for linear algebra (matrix maths) and scientific computing * Easy to use functions and syntax, deliberately similar to Matlab / Octave * Uses template meta-programming techniques to increase efficiency * Provides user-friendly wrappers for OpenBLAS, Intel MKL, LAPACK, ATLAS, ARPACK, SuperLU and FFTW libraries * Useful for machine learning, pattern recognition, signal processing, bioinformatics, statistics, finance, etc. * Downloads:... -
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PyArmadillo
linear algebra library for Python
PyArmadillo - streamlined linear algebra library for Python, with emphasis on ease of use. Alternative to NumPy / SciPy. * Main page: https://pyarma.sourceforge.io * Documentation: https://pyarma.sourceforge.io/docs.html * Bug reports: https://pyarma.sourceforge.io/faq.html * Git repo: https://gitlab.com/jason-rumengan/pyarma -
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DeepLearning
Deep Learning (Flower Book) mathematical derivation
" Deep Learning " is the only comprehensive book in the field of deep learning. The full name is also called the Deep Learning AI Bible (Deep Learning) . It is edited by three world-renowned experts, Ian Goodfellow, Yoshua Bengio, and Aaron Courville. Includes linear algebra, probability theory, information theory, numerical optimization, and related content in machine learning. At the same time, it also introduces deep learning techniques used by practitioners in the industry, including...
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