Search Results for "alignment" - Page 3
Sort By:
Showing 466 open source projects for "alignment"
View related business solutions-
Our Free Plans just got better! | Auth0 by OktaYou asked, we delivered! Auth0 is excited to expand our Free and Paid plans to include more options so you can focus on building, deploying, and scaling applications without having to worry about your secuirty. Auth0 now, thank yourself later.
-
Bright Data - All in One Platform for Proxies and Web ScrapingBright Data offers the highest quality proxies with automated session management, IP rotation, and advanced web unlocking technology. Enjoy reliable, fast performance with easy integration, a user-friendly dashboard, and enterprise-grade scaling. Powered by ethically-sourced residential IPs for seamless web scraping.
-
1
Image16
Image viewer/editor specialized in astrophotography 16bits processing
Opens/saves TIF, FITS, PNG, XISF, PXM, RAW, JPG, XCF, PSD. AsinH, Sqrt, Ln, Exp and Sqr stretching, HSL and RGB adjusting, Levels and Curves adjusting and Background Extraction for Color Balance, Flatness and Gradient Correction. Arithmetic between images. Resizing and croping. Color Balance based on background, selection or stars B-V (after platesolving). Debayering/Bayering. Inversion, mirroring, rotation, barrel/pincushion correction. RGB alignment/shifting. Erode, Dilate, ... Blurring... -
2
SHG SER Processor
SHGs like Sol'Ex captured SER videos processing
Spectroheliograph like Sol'Ex captured SER videos processing with simultaneous extraction and processing of main line image, subtracting image (for Helium), main2 image (for Doppler) and reference image for geometric processing of main image. Saves resulting images (main and reference) in FITS and XCF formats. Separate delta positions from baseline fitted curve for all lines (main, main2/subtractive and reference). Correction of inclination and size ratio of images. Doppler color image... -
3
SimpleXlsxWriter
C++ library for creating XLSX files for MS Excel 2007 and above.
This library represents XLSX files writer for Microsoft Excel 2007 and above. The main feature of this library is that it uses C++ standard file streams. On the one hand it results in almost unnoticeable memory and CPU resources consumption while processing (that may be very useful at saving a large data arrays), but on the other hand it makes unfeasible to edit data that were written. Hence, if using this library the structure of the future report should be known enough. The library... -
4
FFTW++ is a C++ header class for the FFTW Fast Fourier Transform library that automates memory allocation, alignment, planning, wisdom, and communication on both serial and parallel (OpenMP/MPI) architectures. In 2D and 3D, hybrid dealiasing of convolutions substantially reduces memory usage and computation time. Wrappers for C, Python, and Fortran are included.
-
ConnectWise Cybersecurity Management for MSPsConnectWise SIEM (formerly Perch) offers threat detection and response backed by an in-house Security Operations Center (SOC). Defend against business email compromise, account takeovers, and see beyond your network traffic. Our team of threat analysts does all the tedium for you, eliminating the noise and sending only identified and verified treats to action on. Built with multi-tenancy, ConnectWise SIEM helps you keep clients safe with the best threat intel on the market.
-
5
NGSEP
NGSEP (Next Generation Sequencing Experience Platform)
..., format conversion, comparison, clustering, imputation, introgression analysis and different kinds of statistics. Since version 4, we provide functionalities for management of genomes and transcriptomes, including genome alignment and annotation of transposable elements. A complete list of functionalities is available in our wiki (https://sourceforge.net/p/ngsep/wiki/Home/). BEFORE DOWNLOADING: The green button directs to the jar for command line usage. See the wiki for the GUI and other options -
6
stmani3
Stereo Photo Manipulation
A set of programs for Alignment and Rendering of still Stereo Photos (3D). This is a Python3 updated version of the old StMani -
7
EqmodGui
User interface for INDI Eqmod telescope driver
Eqmodgui is a user interface for Linux INDI Eqmod telescope driver. It allow to easily set the main parameters require to use this driver and manage the alignment data. Eqmod is now very simple to use on Linux. This software is part of a full suite for astronomical observation: https://sourceforge.net/projects/skychart/ https://sourceforge.net/projects/ccdciel/ https://sourceforge.net/projects/indistarter/ See also: https://sourceforge.net/projects/indi/ -
8
miRDeep*
MiRDeep*
Please cite: An, J., Lai, J., Lehman, M.L. and Nelson, C.C. (2013) miRDeep*: an integrated application tool for miRNA identification from RNA sequencing data. Nucleic Acids Res, 41, 727-737. We will create index for you if you tell us your interested species (j.an@qut.edu.au). download command line version "MDS_command_line_Vxx.zip" clicking "Browse All Files" please find miRPlant in sourceforge for plant miRNA prediction. -
9
psx-comBINe
PSX Multi-Bin Game Combiner Utility
...) Repairs slightly malformed inputs Ensures proper byte-alignment for the CUE Specifications NOTE This program is in no way intended to support or condone piracy. This program should only be used with legitimately acquired backups of disks you own LEGALLY -
IBM Blueworks Live is a cloud-based business process modeling tool that helps you discover, map and document your processes.With an intuitive, web-based interface, IBM Blueworks Live empowers teams to document, analyze and streamline processes with unprecedented ease and efficiency, with no downloads necessary. It's designed for dynamic collaboration, enabling stakeholders to connect, share insights and drive improvements in real-time, from anywhere.
-
10
ManifoldLearning
Package for manifold learning and nonlinear dimensionality reduction
A Julia package for manifold learning and nonlinear dimensionality reduction. Most of the methods use k-nearest neighbors method for constructing local subspace representation. By default, neighbors are computed from a distance matrix of a dataset. This is not an efficient method, especially, for large datasets. -
11
RAFTS³G
Rapid Alignment Free Tool for Sequences Similarity Search to Groups
| RAFTS3G - Rapid Alignment Free Tool for Sequences Similarity Search to Groups| % Clustering algoritm to create homology clusters based on RAFTS3 (VIALLE, R. A.) % More informations about RAFTS3 in: https://sourceforge.net/projects/rafts3/ % Professional and Technical Education Sector from the Federal University of Paraná - Bioinformatic Lab. % Federal of Paraná University - UFPR % Dr. Alcides Vieira Arco-verde street, 1225 % CEP: 81520-260 Jardim das Américas % Curitiba... -
12
PGMania
Astrophotography image & video processor. Full processing cycle
PGMania - all in one astrophotography package for processing deep sky images. It provides wide and unique functionality, a powerful and flexible tool with a clear and convenient interface for astrophotography image processing. The program performs all processing cycles, including alignment, calibration, stacking, post-processing images, does many secondary operations and much more. With PGMania at the output, we get a clean signal, without hot pixels and noise. All you need to calibrate... -
13
CSAw - NLP for low-resource languages
CSAw is an NLP framework for low-resource languages
... includes transduction algorithms (i.e., from text to semantic representation and back again) and some components needed for automatic language model building (lexical alignment and grammar rule generation). Recently, we have added transliteration functionality. The project is currently incomplete. More to come. -
14
rna-test
script for variant calling of RNA-Seq
rna_test.sh is a shell script to run GATK best practice for variant-calling in RNAseq. It uses STAR2.5 for alignment, HaplotypeCaller to call variants, and Annovar to annotate. It also employs STAR-Fusion, Cufflinks and Stringtie FPKM, HTSeq_count and BAM-readcount. Notice: STAR_gene_read and HTSeq_count are added. exac03nontcga is added. STAR-Fusion is added. Stringtie is added. Disable BQSR (-skb) opteion is added. New avsnp(150) is updated. use -dcov in SplitNCigarReads added... -
15
This software solves the Phylogeny problem using Median Networks. Exact and heuristic methods available. Input: an alignment and a reversible stepmatrix, output: (sub)optimal trees and their combinations. Steiner problem solver included.
-
16
comer2
COMER2, cross-platform software for protein remote homology search
The COMER method based on sequence profile-profile comparison is one of the most sensitive and accurate computational tools developed for protein alignment and homology search. COMER version 2.1 (COMER2) represents one of the fastest implementations of calculations for sensitive protein homology search. High COMER2 performance is achieved by harnessing the power of the Graphics processing unit (GPU). Hence, a GPU is expected to be installed on the system. The files include the compressed... -
17
Infinite
Tabbed text editor with undo/redo/english dictionary/word counter
Tabbed text editor. Plain text (txt) and custom text (bwd/bwp) document formats. Spell checker. Word wrap. Manuscript mode. Extensive backup system so you'll never lose work again. Switch rapidly between files. -
18
Notes Pro V1.1.5.3 (18.03.2024)
Notes Pro V1.1.5.3 (18.03.2024)
... panel displaying line letter count, mouse cursor position, and current date. Users can personalize the notebook with options to adjust font, text color, and alignment. Developed in Lazarus 2.2.6. -
19
Tokenized Text Aligner
Aligns tokens in two versions of a text with differing tokenization.
This tool performs token-by-token alignment of two versions of a text with differing tokenization by interpreting the results of a file diff (https://docs.python.org/3/library/difflib.html). It is intended for use in the preparation of annotated linguistic corpora, where differences in tokenization may arise (i) following corrections or modifications to the source text or (ii) through the creation of different layers of annotation (part-of-speech, treebank) requiring different tokenization... -
20
ClusterAlign
Alignment of tilt-series TEM images based on faint fiducial markers
Tracking markers shown faintly in projections of rotating rigid body with translational jitter based on uniqueness of structures -
21
Tile Pattern Exporter
Tile large format PNG patterns into print-at-home PDF pages
You can tile large format PNG patterns into print-at-home PDF pages. Created for LearnMYOG. This set of scripts automates the tiling of large format PNG files into letter(A4), tabloid(A3), and A0 sized PDF pages with print margins, alignment and cut guides, page numbers, and a copyright stamp to each page. For best results, input an exported PNG with size in multiples of 7.5 inches wide and 10 inches tall @ 300dpi. -
22
CLIP Guided Diffusion
A CLI tool/python module for generating images from text
A CLI tool/python module for generating images from text using guided diffusion and CLIP from OpenAI. Text to image generation (multiple prompts with weights). Non-square Generations (experimental) Generate portrait or landscape images by specifying a number to offset the width and/or height. Uses fewer timesteps over the same diffusion schedule. Sacrifices accuracy/alignment for quicker runtime. options: - 25, 50, 150, 250, 500, 1000, ddim25,ddim50,ddim150, ddim250,ddim500,ddim1000 (default... -
23
CView
Alignment viewer that incorporates a dynamic graphical network.
> CView wiki: https://sourceforge.net/p/cview/wiki/Home/ Related Software: 1. CStone: https://sourceforge.net/projects/cstone/ 2. CSReadGen: https://sourceforge.net/projects/csreadgen/ 3. CView: (See wiki) 4. ChimSim: https://sourceforge.net/projects/chimsim/ 5. TVScript: https://sourceforge.net/projects/tvscript/ -
24
Covidex
Ultra fast and accurate subtyping tool of viral genomes.
Viral subtypes or clades represent clusters among isolates from the global population of a defined species. Subtypification is relevant for studies on virus epidemiology, evolution and pathogenesis. In this sense, Covidex was developed as an open source alignment-free machine learning subtyping tool. It is a shiny app that allows fast and accurate classification of viral genomes in pre-defined clusters. If more than 1000 sequences are loaded the tool will run in multithread mode. Capable... -
25
Peptide Pattern Recognition
Software for non-alignment based analysis of DNA and protein sequences
Software for analysis, grouping and functional prediction of DNA and protein sequences as described in: Busk P.K. (2017). Peptide Pattern Recognition for high-throughput protein sequence analysis and clustering. BioRxiv. doi: https://doi.org/10.1101/181917. Busk P.K. and Lange L. (2013). Function-based classification of carbohydrate-active enzymes by recognition of short, conserved peptide motifs. Appl Environ Microbiol. 79(11), 3380-91. Busk P.K. Lange M. Pilgaard B. and Lange L. (2014)....