Search Results for "algorithm" - Page 27
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Showing 2780 open source projects for "algorithm"
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KMC-KaiC
Kinetic Monte Carlo simulation of the in-vitro Kai Circadian clock
This code is a dedicated Kinetic Monte Carlo (KMC) algorithm which simulates a model of the post-translational Kai circadian clock. The code allows you to simulate the Kai system at the level of individual KaiC hexamers and monomers and explicitly tracks the turnover of every ATP nucleotide. Apart from ATP hydrolysis, all reactions obey detailed balance. The application of the code is described in our article titled "A Thermodynamically consistent model of the post-translational Kai... -
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Genetic Oversampling Weka Plugin
A Weka Plugin that uses a Genetic Algorithm for Data Oversampling
Weka genetic algorithm filter plugin to generate synthetic instances. This Weka Plugin implementation uses a Genetic Algorithm to create new synthetic instances to solve the imbalanced dataset problem. See my master thesis available for download, for further details. -
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ROXter
The easiest way to encypt files or text
This is a ROXster. A program that encrypts files and text with an algorithm based on XOR. You can use it to encrypt your files or text fast and easy. Enjoy! -
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file digest
A command-line utility for calculating and verifying file checksums.
Digest is a command-line utility which can be used to calculate and verify checksums of any files, similar to md5sum or RHash, but using modern hash algorithms. Supported algorithms: BLAKE, BLAKE2, Grøstl, JH, Kupyna, MD5, SHA-1, SHA-2, SHA-3, Skein, SM3, Streebog, Whirlpool. Usage: digest [-c] <algorithm> <filename(s)> For example, if you want to calculate the checksums using skein512/256 algorithm, use this command: digest skein512/256 * > checksums.skein To verify... -
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OWL Machine Learning
Machine learning algorithm using OWL
Feature construction and selection are two key factors in the field of Machine Learning (ML). Usually, these are very time-consuming and complex tasks because the features have to be manually crafted. The features are aggregated, combined or split to create features from raw data. This project makes use of ontologies to automatically generate features for the ML algorithms. The features are generated by combining the concepts and relationships that are already in the knowledge base,... -
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IQM-Plugin-PPI
PPI Index
This is an IQM plugin to compute the PPI index for binary digital images. This index represents the compactness of an object. PPI is computed with the FFI index and the Lacunarity using the ToW algorithm: PPI = FFI^(Ltw) For FFI, please see: https://sourceforge.net/projects/iqm-plugin-ffi/ Andronache etal. Fractal analysis for studying the evolution of forests, Chaos, Solitons & Fractals, 2016, Vol 91, 310-318. For Tug of War Lacunarity, please see: Reiss, Lemmerer, Hanslmeier... -
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absens
game of nil or eternity
Simple or complex game -
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ipytracer
Algorithm Visualizer for IPython/Jupyter Notebook
Algorithm Visualizer for IPython/Jupyter Notebook. If you use the display(TracerObject) code from where you want to see, you can use it without any special modification. -
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CUBiBit
Tool to search binary biclusters on CUDA-enabled GPUs
... phase of the algorithm on several CPU cores. -
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GAVGA
A Genetic Algorithm for Viral Genome Assembly
GAVGA is a Genetic Algorithm for Viral Genome Assembly. It can be used in the assembly of small genomes, like viral ones. -
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The purpose of this program is to provide the user with a convenient algorithm for automatic Independent Component (IC) selection with respect to the contributions of the ICs to a certain event-related brain potential (ERP). www.jan-wessel.de
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Shortest Path Graph A star
finds the sortest path on the directed graph using A* algorithm.
It is the implementation of the A* algorithm for directed graph. Additionally, the implementation of the Graph is provided. For visualization of the graph and the results of the A* algorithm the data are exported in GraphViz (Graph Visualization Software) format: http://www.graphviz.org/ Various exemplary solutions are provided. See also my other two projects related to A* algorithm: https://sourceforge.net/projects/path-finder-qt/ https://sourceforge.net/projects/a-star/ -
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WebService::UMLSKS::Similarity::Java
A measure of semantic relatedness between medical terms using Java
This is a Java implementation of HSO measure of finding semantic relatedness. The measure is applied to UMLS source vocabularies and is used to find relatedness between medical terms. This implementation uses same algorithm as WebService::UMLSKS::Similarity, a CPAN perl open source package. -
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EntOpt Layout
Relative entropy optimization network layout plugin
The goal of this project is to implement a graph layout / network visualization algorithm as a Java plugin for Cytoscape (http://cytoscape.org/), using a recently published relative entropy optimization based method, called Unified Data Representation (Kovács IA et al. Sci Rep. 2015). If you are using the plugin, please cite: Ágg B, Császár A, Szalay-Bekő M, Veres DV, Mizsei R, Ferdinandy P, Csermely P and Kovács IA (2019) The EntOptLayout Cytoscape plug-in for the efficient visualization... -
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Illustrated Algorithms
Interactive algorithm visualizations
Inspired by Grokking Algorithms and python-execution-trace, this project aims to reveal the mechanics behind algorithms via interactive visualizations of their execution. Visual representations of variables and operations augment the control flow, alongside actual source code. You can fast forward and rewind the execution to closely observe how an algorithm works. The same code that is displayed next to the illustration is also decorated using babel-plugin-trace-execution and executed to record... -
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Path Finder Qt
finds the sortest path on the square board. GUI is implemented in Qt.
The program demonstrates the usage of the A* algorithm to find the shortest path. It searches the shortest path between source piece and target piece on the rectangular board. On the board the obstacles (wall) can be constructed. In addition to the algorithm, the GUI is provided. The GUI is written in Qt. Using the GUI, one can construct and move interactively the obstacles on the board. For every modification of the board, the shortest path is calculated automatically. Some statistics... -
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RElt
calculates overlap, kinetic integrals for numerical atomic orbitals.
The efficient algorithm calculating the overlap and the kinetic integrals for the numerical atomic orbitals is implemented. The described algorithm exploits the properties of the prolate spheroidal coordinates. The overlap and the kinetic integrals in R^3 are reduced to the integrals over the rectangular domain in R^2, what substantially reduces the complexity of the problem. We prove that the integrand over the rectangular domain is continuous and does not have any slope singularities... -
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JView is a command line client for MyWebProject SOAP Web Service. Usage: param 1: endpoint, param 2: remote folder, param 3: algorithm, param 4: modeParam, param 5: userName, param 6: password, param 7: outputFile Example: java -jar JView2.jar http://davidesestili.ddns.net:8080/MyWebProjectLogin/services/GenerateAndDownloadHashWSLogin /home/dsestili82/ SHA-512 no-subfolders davide davide /home/davide/Scaricati/mozilla.sha512 (Currently unavailable) Source code available on https...
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A spring-based 3D graph layout tool written in Java. Rendering is performed in OpenGL via the JOGL library.
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SummitDB
In-memory NoSQL database with ACID transactions, Raft consensus, etc.
SummitDB is an in-memory, NoSQL key/value database. It persists to disk, uses the Raft consensus algorithm, is ACID compliant, and is built on a transactional and strongly-consistent model. It supports custom indexes, geospatial data, JSON documents, and user-defined JS scripting. The easiest way to get SummitDB is to use one of the pre-built release binaries which are available for OSX, Linux, and Windows. SummitDB can be compiled and used on Linux, OSX, Windows, FreeBSD, ARM (Raspberry PI... -
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Plagiarism Checker Pro
Plagiarism Checker for Wordpress
Plagiarism Checker Pro plugin checks for copied or duplicate content on Wordpress platform. Plagiarism Checker PRO provides plagiarized percentage for the copied content using an unique set of algorithm. For time being supports English language. -
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Simple Seismic Viewer
A simple seismic viewer
Simple seismic viewer with mapping capabilities and trace filtering. Seismic visualization includes trace spectrum computation on the fly and Wigner-Ville transform and visualization. All data formats in the latest SEG-Y_r2.0 are now included. Version 1.1.3 now include a smoothed Wigner-Ville distribution function algorithm. Version 1.1.4 now include the ability to specify byte locations and byte lengths for data reading. Version 1.1.6 now include fist break picking capabilities using... -
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rhythm
Rhythm Generator (Naive Interference Algorithm)
This portable program can help musician discover sequences of rhythms. -
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Unconventional Type of PRNG in GO
Implements a newer type of PRNG in Go
This implements the new type of random number generator (from the year 2000 paper). I have modifed their algorithm slightly-so it is suit an implementation in Go -
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Machine Learning:Perceptron
Minimal version of the perceptron algorithm.Coded the simpler way.
A minimal version of the perceptron algorithm is implemented in C#. Coded for ease of understanding the referred to algorithm. Enter your info-press the learn button-then type in new info which the program will try and recognnise. There are some typos in the text displayed-but the code is correct.
