Search Results for "reaction" - Page 2
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Showing 144 open source projects for "reaction"
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PeMSyn
Matlab/Scilab-FEMM based GUI to Assist the Design of Permanent Magnet
... for PC during the design process - Winding Wizard Assistant - Performance Simulator (FEMM Based) --- No-Load and On-Load parameters assessment considering armature reaction and saturation effects --- Torque Curve Capability assessment --- Parallel Processing (Matlab only) TUTORIAL included! https://www.youtube.com/channel/UCP2N1ELg1SAqlA8VCkSWRlw https://dx.doi.org/10.18618/REP.2020.2.0009 http://dx.doi.org/10.1109/COBEP/SPEC44138.2019.9065650 geyverson@ieee.org -
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Palladium-OS
An AOSP based ROM focusing mainly on Customisation and Simplicity.
Palladium OS (abbreviated pdOS), is a Custom ROM based on Android 11 and the element palladium. Android 11 is the most significant Android updates feature-wise after Android 9 while the element palladium is all about Non-Reactiveness ( Stable), Absorption Capacity ( Abundant Features) and Reaction Time ( Speed at its finest). So, it isn't yet another ubiquitous ROM. pdOS is speed and stability at its finest. But the game-changer here is that this is a community-driven OS. Anyone can request... -
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dualword-rt
measuring bimanual simple visual reaction time
measuring bimanual simple visual reaction time Source code: http://github.com/dualword/dualword-rt -
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EN-ALT 7.00
A new version of EN-ALT Command Structure for Action Reaction Language
This is a new version of EN-ALT Command Structure for Action Reaction Language (ARL) -
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ARLLibraryUpdate2020
An update for Action Reaction Language Library
Only download if you have Action Reaction Language installed on your pc. This is an update for ARLanguage . Download this package and copy it into the directory called ARL in program files -
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A library of C codes for storing and managing nuclear reaction networks, that is, ensembles of nuclear species and reactions among them.
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MoCalc2012
GUI for MOPAC, DFTB+, GAMESS, Firefly, NWChem, ORCA and PSI4
MoCalc2012 is a simple, efficient Graphical User Interface for MOPAC, DFTB+, GAMESS(US), Firefly, NWChem, ORCA and PSI4. -
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CRP - Chemical Reaction Prediction
Predicting Organic Reactions using Neural Networks.
The intend is to solve the forward-reaction prediction problem, where the reactants are known and the interest is in generating the reaction products using Deep learning. This Graphical User Interface takes simplified molecular-input line-entry system (SMILES) as an input and generates the product SMILE & molecule. Beam search is used in Version 2, to generate top 5 predictions. Maximum input length for the model is 15 (excluding spaces). -
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OptFlux is an open-source and modular software aimed at being the reference computational application in the field. It is the first tool to incorporate strain optimization tasks, i.e., the identification of Metabolic Engineering targets.
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The Crux
Experimental data modelling and simulation
Parameter optimization program with objective functions for the quantitative estimation of biochemical/biophysical reaction parameters (equilibrium and rate constants, etc.) -
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Rhea is a reaction database, where all reaction participants are linked to the ChEBI database (Chemical Entities of Biological Interest). Rhea provides built-in validations that ensure both mass and charge balance of the reactions.
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Material Motion
A toolkit for building responsive motion using Core Animation
Reactive motion is driven by Core Animation. CocoaPods is a dependency manager for Objective-C and Swift libraries. CocoaPods automates the process of using third-party libraries in your projects. See the Getting Started guide for more information. You will need to add use_frameworks! to your Podfile in order use Material Motion in your swift app. A contextual view can be used to create continuity during transitions between view controllers. In this case study the selected photo is the... -
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Iphigenie
A fast and versatile molecular dynamics program
The molecular mechanics (MM) program Iphigenie provides a broad range of molecular dynamics (MD) methods and technologies, including polarizable force fields (PMM), the HADES reaction field, and QM/(P)MM hybrid simulations. -
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diauxic growth model ensemble
An ensemble of models showing diauxic growth behavior
... be categorized according to regulatory, stoichiometric, and physiological constraints and differ from each other on only a single aspect. We distinguish four groups of models: (1) flux balance models that only define reaction kinetics for substrate uptake and by-product excretion, (2) kinetic models without and (3) kinetic models with regulation on the metabolic and/or genetic level, and (4) resource allocation models. -
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ChimeraDetector
ChimeraDetector detects aberrant chimeras in given genome sequences.
Chimeras are organisms composed of cells that originate from two or more different species. The name chimera comes from Greek mythology and describes a creature with the head of a lion, the body of a goat, the tail of a serpent and a head of dragon on its back. Chimeric DNA sequences often form during polymerase chain reaction amplification, especially when sequencing single regions to assess diversity or compare populations. Some randomly formed chimeras cause destruction. In plants... -
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Stochastic simulator for signaling pathways occuring in biological cells. Handles reaction-diffusion processes in 3D tetrahedral meshes. Please check our new repository: https://github.com/CNS-OIST/STEPS
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UMI-Reducer
collapsing technical duplicates via Unique Molecular Identifiers
Every sequencing library contains duplicate reads. While many duplicates arise during polymerase chain reaction (PCR), some of these duplicates derive from multiple identical fragments of mRNA present in the original lysate (termed "biological duplicates"). Unique Molecular Identifiers (UMIs) are random oligonucleotide sequences that allow differentiation between technical and biological duplicates. Here we report the development of UMI-Reducer, a new computational tool for processing... -
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cupSODA
Deterministic simulator of mass-action based models
cupSODA is a simulator of biological systems that exploits the remarkable memory bandwidth and computational capability of GPUs. cupSODA allows to efficiently execute in parallel large numbers of simulations, which are usually required to investigate the emergent dynamics of a given biological system under different conditions. cupSODA works by automatically deriving the system of ordinary differential equations from a reaction-based mechanistic model, defined according to the mass-action... -
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pybrn is a Python package for the analysis of biochemical reaction networks. It provides basic model handling capabilities, import from SBML, analysis of conservation relations, steady state computation and model simulation.
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ChemStud
android app for engineers and scientists
Carryout unit conversions, perform definite integrals, solve for simultaneous equations and Ordinary Differential Equations from reaction data, solve for electrical engineering circuit problems and optimize linear programming problems -
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FAST Simulations
An Open source Analysis and SImulation Toolbox for Fuel Cells
... B. Harvey. Features of FAST-fc include transport of gases and liquids, multi-step reaction kinetics, transient and steady state operation for performance and durability, and scalable dimensionality from 1D - 3D domains. Future development work is on-going in FAST-fc and our strategic development schedule includes membrane degradation, improved liquid water transport models through the application of pore networks, and extension to stack-level simulation. -
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Notice: RMG-Java is no longer in active development. Please find the latest version written in Python at http://reactionmechanismgenerator.github.io To see the website o the old Java version of RMG, visit http://rmg.sourceforge.net RMG (Java version) is an automatic chemical reaction mechanism generator that constructs kinetic models composed of elementary chemical reaction steps using a general understanding of how molecules react (currently limited to C, H, O, and S atoms).
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Continuous time Markov chain (CTMC) can be used to describe describe the number of molecules and the number of reactions at any given time in a chemical reaction system. Gillespie algorithm is an important stochastic simulation algorithm, used to simulate each reaction track events of continuous time Markov chain in the number of collision frequency and collision time, but the computational cost is inevitably. In this project, Gillespie’s algorithm with rejection sampling introduces...
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ddtFoam
OpenFOAM solver to simulate the deflagration-to-detonation transition
This solver represents an addition to the open-source CFD package OpenFOAM. The solver is used to simulate the deflagration-to-detonation transition in hydrogen-air mixtures. Prominent features are described below. Additional description is available in the pdf file included. For a more detailed description download Florian Ettner's thesis (in German) from http://www.td.mw.tum.de/tum-td/de/forschung/dissertationen/download/I2013/Ettne13.pdf [8.6 MB] A shorter description (in English) can...