Search Results for "dna computing simulator" - Page 2

A parallel system simulator kernel that support ultra-large scale computer system simulation.

High-throughput next generation sequencing (NGS) technology has quickly emerged as a powerful tool in many aspects of biomedical research. However, along with its rapid development, the data magnitude and analysis complexity for NGS far exceed the capacity and capability of traditional small-scale computing facilities, such as multithreading algorithms on standalone workstations. To address this issue, here we present a solution using the ever-increasing supply of processing power by massive...

RealCloudSim is a simulator for allocations in cloud computing. Note: We are migrating to simulate data traffic inside data centers with a new project, known as MILPFlow. Available at: https://sourceforge.net/projects/milpflow

ShoX is a scalable simulator for wireless networks written in Java. It is easy to install, configure and use, so that reliable and expressive scientific results can be gathered in a short time. Documentation: http://sourceforge.net/apps/mediawiki/shox

This repository stores the public code and executable binaries of the Economically Enhanced Resource Manager (EERM) Simulator, coded as part of my research in Market-based Cloud Computing ( http://mario.site.ac.upc.edu ).

DReAMSim provides a simple simulation framework for modeling homogeneous and/or heterogeneous (re)-configurable processing elements in a large-scale distributed environment. In particular, DReAMSim enables users to model task scheduling techniques at a preliminary design stage in order to investigate their performance potential. The simulation framework makes it easy to extract various performance and resource utilization related statistics to study the behavior of different task...

Simuquant is made to construct and simulate universal quantum circuits. It's GUI enables intuitive access and direct graphical feedback, making it useful in a classroom situation and the like. Simulation processing is done in parallel, utilizing parallel collections introduced in scala 2.9. This application has been created as part a bachelor-thesis at the Hamburg University of Applied Sciences. The thesis is available...

This are three main functions in this program: (1) This program will be used to make random diversity dna sequence with a set happening frequecy It can make an offspring(testing) sequence with mutation according to a ancestor(reference) sequence, wh

Spotckpt is a simulator for the following study; "Reducing Costs of Spot Instances via Checkpointing in the Amazon Elastic Compute Cloud"

This project provides a simulator for measuring execution time and total monetary costs on the Amazon EC2's spot instances.

RAINIER: Rapid Automated Inference of Nucleic-Acid Interaction Energy using Refinement RAINIER is a protein simulator that can predict the interface structure of DNA- and RNA-binding proteins, using statistical and physical techniques.

Artifical Life simulator that employs techniques from evolutionary computing to design embodied neural networks. Essentially, simple organisms run around in a small 3-D world and compete and breed with one another. Please visit the Wiki for orientation.

A graphical simulator for the LC3 processor, concentrating on the micro-architecture level. The processor is thoroughly described in "Introduction to Computing Systems: From Bits & Gates to C & Beyond" by Yale Patt and Sanjay Patel (ISBN-0-07-246750-9

OptorSim is a Grid simulator designed to test dynamic replication strategies used in optimising data location within a Grid. Each simulated site contains several storage or computing elements. Simulated jobs run and file accesses may trigger replication.

This project about providing run-time support for developing Decentralized Autonomic Computing systems (Eclipse Innovation Grand). Currently the project contains a automatic guided vehicle (AGV) simulator and an editor and visualisation as eclipse plugin

A simulator for a FLEET processor architecture. Purpose: Research of new processor architectures and new approaches to parallel computing.

NoCsim is a base library and front end for simulating Network On Chip environments utilizing Wormhole or Virtual Cut-Through routers. The current usage of the simulator includes experimentation with various routing protocols and functional unit mappings.

OpenEERS (Open Earthquake Engineering Response Simulator) is a Matlab program for computing and animating the linear elastic response of discrete multiple degree of freedom structural systems using Newmark's Method.

JSim8086 is platform-independent Assembly Language Simulator of the Intel 8086 CPU. It was designed to be a learning tool (CAL) for first year Computing students who are learning Computer Systems Organisation and Assembly Programming.

The Multi-Simulator Interface (MSI) is a simulation interconnection engine. It connects simulations by synchronizing their clocks and data. It is a light-weight HLA alternative.

Mupisim is a simulator for distributed, mobile systems. Its primary purpose is the study of mobile processes (e.g. mobile agents) and their communication mechanisms. It may also be used to evaluate the efficiency of a given process migration scheme.

RangeSim is a collection of classes for simulating distributed protocols for range search on P2P (peer-to-peer) network environments. It is based upon the PeerSim simulator, which offers easy configuration, extendability and high performance.

Protorium is an artificial life simulator, where cells interact with each other. The aim is to find the simplest cell model that could lead to complexe life forms. (the cell model includes molecules, enzymes, RNA, DNA)

Simulator of massively parallel computer cluster with minimal nodes. Loosely based around available information regarding Chuck Moore's c18/25x core/chip designs. Machine Forth based MISC NOSC nodes, mesh interconnection.

This project contains a large set of physics simulations and scientific computing scripts for the web.