Search Results for "python data analysis" - Page 140
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Showing 6385 open source projects for "python data analysis"
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This project enables a user to conduct an AERMOD sensitivity analysis for both *.PFL and *.SFC input files, and quickly export data. The scripts have been created in the Python environment and are straight forward, ready to use. Aside from using the data in the python environment, an option is given to export to at MATLAB *.mat file.
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FineSplice
Enhanced splice junction detection and estimation from RNA-Seq data
FineSplice is a Python wrapper to TopHat2 geared towards a reliable identification of expressed exon junctions from RNA-Seq data, at enhanced detection precision with small loss in sensitivity. Following alignment with TopHat2 using known transcript annotations, FineSplice takes as input the resulting BAM file and outputs a confident set of expressed splice junctions with the corresponding read counts. Potential false positives arising from spurious alignments are filtered out via a semi... -
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BGINFO4X - BGINFO for X and for Windows!
Shows desktop information on your screen
BGINFO for X, also called BGINFO4X, is a clone of the popular program BGINFO for Microsoft Windows created by Sysinternals. BGINFO4X is designed for pretty print useful information (CPU model, Hostname, IP address, OS version, Office version, and much more ...) on your desktop background or wallpaper. See the screenshots to see BGINFO4X in action. BGINFO4X is Multi Platform (Windows, MacOSX, Linux, BSD). BGINFO4X is Highly Customizable. BGINFO4X is Open Source. BGINFO4X comes... -
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apm
Application Portfolio Manager
Application Portfolio Manager gives you the ability to enter data relating to your applications and the hardware on which they reside. You can then easily search on either the application or equipment to determine the possible effects of changes within your systems. Written using the web2py framework available at www.web2py.com -
Secure remote access solution to your private network, in the cloud or on-prem.OpenVPN is here to bring simple, flexible, and cost-effective secure remote access to companies of all sizes, regardless of where their resources are located.
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Zipabox Connector
Zipabox connector : it uses the API to publish data on Open.Sen.se
The goal of this project is to use the API of the Zipabox and to publish data on Open.Sen.se. My primary goal was to obtain graphics like temperature or electrical consumption. This project will may be evolve with some other users... -
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Seal
A toolkit for distributed processing of HT sequencing data.
Seal is a Hadoop-based distributed short read alignment and analysis toolkit. Currently Seal includes tools for: read demultiplexing, read alignment, duplicate read removal, sorting read mappings, and calculating statistics for empirical base quality recalibration. Seal scales, easily handling TB of data. -
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Skype Xtractor
Xtractor for Skype's databases (main.db and chatsync)
Skype xtractor for Linux and Windows is a python tool developed for the Forensics distro DEFT Linux 8. Extracts data from the Skype's main.db, including contacts, chats, calls, file transfers, and deleted/modified messages from chatsync databases Usage: read README file Required: Python 2.7 Feedback and bug reporting appreciated :) -
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JointTrack will calculate and report the 3-D motions of bones or artificial implants from 2-D image data obtained from X-Ray films or fluoroscopic video.
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DDMsuite
Derivative Difference Minimization Program
DDM program is designed for crystal structure analysis from powder diffraction data by making use of either Rietveld or Derivative Difference Minimization (DDM) method. In the DDM method the refinement is aimed not at minimizing the absolute difference between the experimental and calculated profiles but at minimizing the oscillations (or curvature) of the difference curve. The squared values of the difference curve derivatives are used in DDM as a measure of the difference curvature. The main... -
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caplib
Correct, translate and analyze combinatorial library sequencing data
Originally developped to handle PacBio CCS data for an AAV capsid library. This program will extract, correct, translate and analyze the sequencng data, starting from the CCS fastq file. -
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rule2hex
r2hex is a python class for parsing snort or suricata rules
r2hex is a python class for parsing snort or suricata rules. Data in hexadecimal format is generated by the class that can be used to generated network data and used to trigger the alert. To be completed -
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A scientific computing and data-handling library for C, providing functions on the same level as those of the typical stats package (OLS, probit, singular value decomposition, &c.). Written to facilitate writing fast and easy C code. The project has moved to https://github.com/b-k/Apophenia .
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WISP
Weighted Implementation of Suboptimal Paths (WISP)
UPDATE: LATEST VERSION AT http://git.durrantlab.com//jdurrant/wisp Allostery can occur by way of subtle cooperation among protein residues (e.g., amino acids) even in the absence of large conformational shifts. Dynamical network analysis has been used to model this cooperation, helping to computationally explain how binding to an allosteric site can impact the behavior of a primary site often many angstroms away. Traditionally, computational efforts have focused on the most optimal path... -
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PyTIAClient
A Python client for receiving TIA data streams.
PyTIAClient implements the TIA (TOBI Interrface A) protocol to connect to a TIA server and receive data streams. It is written in pure Python and only depends on modules from the standard Python library. -
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xSonify
Java-based sonification data analysis
xSonify is a Java-based sonification data analysis prototype for displaying science data as sounds, with an emphasis on supporting visually-impaired researchers. Alternatives include Sonification Sandbox <http://sonify.psych.gatech.edu/research/>, MathTrax and Earth Plus <http://prime.jsc.nasa.gov/>, Sonifyer <http://www.sonifyer.org> and SoniPy <http://sourceforge.net/projects/sonipy/>. More at the main forum for sonification, ICAD <http://icad.org> -
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BandwidthD-IPv6
Collects data about network useage using libpcap.
Based off of bandwidthd (http://sourceforge.net/projects/bandwidthd) but updated to support large networks (13,000+ devices). IPv6 support is in the works. Our thanks goes to the original authors of bandwidthd who made this possible. -
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K-Surfer
A KNIME extension for the management and analysis of FreeSurfer Data
K-Surfer is a novel and unique software plugin for KNIME for the management and analysis of FreeSurfer brain dMRI data. K-Surfer consists of a suite of KNIME nodes that perform several tasks, such as importing diffusion data generated from TRACULA, importing morphological measures obtained from the segmentation and reconstruction of neuroimages and visualising the probability distribution of white matter pathways. For installation guide read the pdf inside the zip. References: Sarica... -
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Matlab Community Detection Toolbox
CDTB is a MATLAB toolbox which performs Community Detection
... the functions from the MATLAB command line; or he can write his own code, incorporating the CDTB functions; or he can use the Graphical User Interface (GUI) which automates the community detection and includes some data visualization options. -
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q pipeline manager
q: integrated platform for pipeline configuration and management
The q utility is a platform for creating and managing data analysis pipelines. It expands the value of your existing job scheduler - either Grid Engine or TORQUE PBS - through numerous functions that help you organize, submit, monitor, manage and share your informatics work. Data processing pipelines require high-level organization and parallelization of work to optimize resource utilization and decrease the time to results. q (from queue) allows complex job sequences to be efficiently... -
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Pyphant is a framework for scientific data analysis. It features a flexible plugin architecture allowing for the application in many different fields. For the analysis a graph of processing steps is constructed, that can be applied via the cli as well.
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Code Runner is a powerful framework for automating the running and data analysis of large codes and simulations, working anywhere from laptops to HPC clusters.
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FoodPhysicsApplication
A C# application for scientists in the area of physical chemistry
The project has been created to develop a software that can help scientists in the area of physical chemistry with focus on foods data analysis tools that are currently mainly done by hand. In the first step, advanced analysis of texture analyzer compression data are provided and the project will be extended over time dependent on the time I can get to continue with it. -
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Bika Open Source LIMS/LIS
Web based laboratory information management system
A web-based LIMS (Laboratory Information Management System) · Built in Plone · Professionally supported · Making waves · bi:ka (Zulu): tell it as it is More information and links to manuals, user forums, support and translations are available at https://www.bikalims.org/support-and-service-provision Bika community: www.bikalims.org Main project sponsor, Bika Lab Systems: www.bikalabs.com Inquiries: lemoene@bikalabs.com -
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PyRadMon
Automated reporting of Geiger Muller counter readings to RadMon.org
This project includes several Python and bash scripts designed to connect Geiger Muller counters to report their results to RadMon.org. Soon the script will also feature local logging, graphing and alerting. Just because the Cold War is "over" does not mean that there is no more threat of a radiological attack. In fact, the U.S. Homeland Security Council lists the "Detonation of a 10 Megaton Improvised Nuclear Device" as "Scenario #1" among the top 15 threats to American security... -
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QuantComponents
Free Java components for Quantitative Finance and Algorithmic Trading
An open-source framework for financial time-series analysis and algorithmic trading, based on Java and OSGi, with an Eclipse front-end. * Highly modular: usable as plain java API, OSGi components, or integrated into Eclipse * Standalone or client-server architecture, depending on performance and reliability needs * Integrated with Interactive Brokers through IB Java API * Generic broker API, it can easily be extended to work with other brokers * It works with historical and/or realtime...
