Search Results for "python data analysis"
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Showing 160 open source projects for "python data analysis"
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Peroxide
Rust numeric library with high performance and friendly syntax
Rust numeric library contains linear algebra, numerical analysis, statistics and machine learning tools with R, MATLAB, Python-like macros. Peroxide uses a 1D data structure to represent matrices, making it straightforward to integrate with BLAS (Basic Linear Algebra Subprograms). This means that Peroxide can guarantee excellent performance for linear algebraic computations by leveraging the optimized routines provided by BLAS. For users familiar with numerical computing libraries like NumPy... -
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gramm
Gramm is a complete data visualization toolbox for Matlab
... for GRAMmar of graphics for MATLAB. A similar library called Seaborn also exists for Python. Gramm has been used in many publications from varied fields and is particularily suited for neuroscience, from human movement psychophysics (Morel et al. 2017), to electrophysiology (Morel et al. 2016; Ferrea et al. 2017), human functional imaging (Wan et al. 2017) and animal training (Berger et al. 2017). -
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FieldTrip
The MATLAB toolbox for MEG, EEG and iEEG analysis
FieldTrip is the MATLAB software toolbox for MEG, EEG and iEEG analysis, which is released free of charge as open source software under the GNU general public license. FieldTrip is developed by members and collaborators of the Donders Institute for Brain, Cognition, and Behaviour at Radboud University, Nijmegen, the Netherlands. The toolbox offers advanced analysis methods of MEG, EEG, and invasive electrophysiological data, such as time-frequency analysis, source reconstruction using dipoles... -
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hctsa
Highly comparative time-series analysis
hctsa is a Matlab software package for running highly comparative time-series analysis. It extracts thousands of time-series features from a collection of univariate time series and includes a range of tools for visualizing and analyzing the resulting time-series feature matrix. -
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segyio
Fast Python library for SEGY files
Segyio is a small LGPL-licensed C library for easy interaction with SEG-Y and Seismic Unix formatted seismic data, with language bindings for Python and Matlab. Segyio is an attempt to create an easy-to-use, embeddable, community-oriented library for seismic applications. Features are added as they are needed; suggestions and contributions of all kinds are very welcome. -
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TIGRE
TIGRE: Tomographic Iterative GPU-based Reconstruction Toolbox
TIGRE is an open-source toolbox for fast and accurate 3D tomographic reconstruction for any geometry. Its focus is on iterative algorithms for improved image quality that have all been optimized to run on GPUs (including multi-GPUs) for improved speed. It combines the higher-level abstraction of MATLAB or Python with the performance of CUDA at a lower level in order to make it both fast and easy to use. TIGRE is free to download and distribute: use it, modify it, add to it, and share it. Our... -
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JSONLab
JSONLab: compact, portable, robust JSON/binary-JSON encoder
JSONLab is a free and open-source JSON/UBJSON/MessagePack encoder and decoder written in the native MATLAB language. It can be used to convert a MATLAB data structure (array, struct, cell, struct array, cell array, and objects) into JSON/UBJSON/MessagePack formatted strings and files, or to parse a JSON/UBJSON/MessagePack file into MATLAB data structure. JSONLab supports nearly all versions of MATLAB and GNU Octave (a free MATLAB clone). The development of JSONLab is currently funded by the US... -
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Veritas RIXS Analysis
Advanced data analysis for Veritas beamline at MAX IV
You can do advanced analysis using the raw data from RIXS .h5 file. It has several tabs using which you can do different types of analysis, thereby utilizing the full potential of the Veritas beamline. Some of the features in addition to standard RIXS data analysis are: - continuous and discrete RIXS maps, - RIXS spectromicroscopy, - radiation damage analysis, - Q calibrations. -
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Armadillo
fast C++ library for linear algebra & scientific computing
* Fast C++ library for linear algebra (matrix maths) and scientific computing * Easy to use functions and syntax, deliberately similar to Matlab / Octave * Uses template meta-programming techniques to increase efficiency * Provides user-friendly wrappers for OpenBLAS, Intel MKL, LAPACK, ATLAS, ARPACK, SuperLU and FFTW libraries * Useful for machine learning, pattern recognition, signal processing, bioinformatics, statistics, finance, etc. * Downloads:... -
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GMAT
General Mission Analysis Tool
The General Mission Analysis Tool (GMAT) is an open-source tool for space mission design and navigation. GMAT is developed by a team of NASA, private industry, and public and private contributors. The GMAT development team is pleased to announce the release of GMAT version R2025a. For a complete list of new features, compatibility changes, and bug fixes, see the R2025a Release Notes in the Users Guide. -
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MatCont
Numerical Bifurcation Analysis Toolbox in Matlab
MatCont is a Matlab software project for the numerical continuation and bifurcation study of continuous and discrete parameterized dynamical systems. Leaders of the project are Willy Govaerts (Gent,B) and Yuri A. Kuznetsov (Utrecht,NL) and Hil G.E. Meijer (UT, Enschede, NL). Matcont for ODEs and MatcontM for Maps Publishing a paper using our software? That's great. Please do us a favour and cite: New features of the software MatCont for bifurcation analysis of dynamical systems... -
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BioSig is a software library for processing of biomedical signals (EEG, ECG, etc.) with Matlab, Octave, C/C++ and Python. About 50 different data formats are supported.
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LabPlot
Data Visualization and Analysis
LabPlot is a FREE, open source and cross-platform Data Visualization and Analysis software accessible to everyone. -
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Gait Analysis Graphical User Interface
Extracts gait parameters from 120 fps video of mouse walking
This project enables behavioral scoring of mouse gait using MATLAB. This was developed and used in the laboratory of Veronique VanderHorst, MD PhD at Beth Israel Deaconess/Harvard Medical School. First, a GUI displays videos of mice walking on a custom apparatus and enables the user to manually detect paw position. This data is saved. Additional functions take this spatiotemporal information and extract commonly used gait parameters, which are then exported to a MATLAB structure to be used... -
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The auditory modeling toolbox (AMT) is a Matlab/Octave toolbox for the development and application of auditory computational models. Over 50 auditory models implemented in Matlab, Octave, C, C++, and Python can be run from Matlab and Octave, on Windows and Linux. The AMT provides a well-structured in-code documentation, includes auditory data required to run the models. It integrates functionality to reproduce the model predictions. Model implementations can be evaluated in two stages...
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PROPER Optical Propagation Library
Routines for wavefront propagation in IDL, Matlab, and Python
PROPER is a library of routines for the propagation of wavefronts through an optical system using Fourier-based methods. It was developed at the Jet Propulsion Laboratory for modeling stellar coronagraphs, but it can be applied to other optical systems were diffraction propagation is of concern. It is currently available for IDL (Interactive Data Language), Matlab and Python (3.x). It includes routines for generating complex apertures and obscurations and aberrations (Zernike & PSD-defined... -
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Artifact GeoMorph Toolbox 3D 3.1
A toolbox for 3DGM shape analysis of archaeological artifacts
The Artifact Geomorph Toolbox 3D software is designed to provide the archaeologist interested in artifact shape variability with a toolbox to allow the acquisition, analysis and results exploration of homologous 3D landmark-based geometric morphometric data. As such, the toolbox contains an automated item and semi-landmarks positioning procedure and the fundamental statistical analyses and procedures to allow the processing and analysis of the data. It is designed to be easy to use... -
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A Matlab toolkit for all aspects of EEG/ERP analysis, especially PCA. If you run into a problem, please send me a note and I'll fix it. The tutorial pdf is in the documentation folder and the tutorial data can be downloaded from a link provided by the pdf. The tutorial file has full install instructions. For all platforms supported by Matlab.
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CometAnalyser
CometAnalyser, for quantitative comet assay analysis.
Description: Comet assay provides an easy solution to estimate DNA damage in single cells through microscopy assessment. To obtain reproducible and reliable quantitative data, we developed an easy-to-use tool named CometAnalyser. CometAnalyser is an open-source deep-learning tool designed for the analysis of both fluorescent and silver-stained wide-field microscopy images. Once the comets are segmented and classified, several intensity/morphological features are automatically exported... -
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Eventer
Rapid, unbiased, reproducible analysis of synaptic events
Eventer is a programme designed for the detection of spontaneous synaptic events measured by electrophysiology or imaging. The software combines deconvolution for detection, and variable length template matching approaches for screening out false positive events. Eventer also includes a machine learning-based approach allowing users to train a model to implement their ‘expert’ selection criteria across data sets without bias. Sharing models allows users to implement consistent analysis... -
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AtomProbeLab
Matlab-based analysis of Atom Probe Data
A collection of scripts and functions for the analysis of atom probe tomography data. Currently, this includes: standard file operations, plotting mass spectra, mass spectra analysis and mass peak overlap solving. For more information see the Wiki: https://sourceforge.net/p/atomprobelab/wiki/Home/ Quick overview video: https://youtu.be/8rJHce7M5UU More in-depth video using the APT school demos live script: https://www.youtube.com/watch?v=cyrLHCzZwuw For details of the maximum likelihood... -
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mTRF-Toolbox
A MATLAB package for modelling multivariate stimulus-response data
mTRF-Toolbox is a MATLAB package for modelling multivariate stimulus-response data, suitable for neurophysiological data such as MEG, EEG, sEEG, ECoG and EMG. It can be used to model the functional relationship between neuronal populations and dynamic sensory inputs such as natural scenes and sounds, or build neural decoders for reconstructing stimulus features and developing real-time applications such as brain-computer interfaces (BCIs). Toolbox Paper: http://dx.doi.org/10.3389/fnhum... -
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DimCE
Tool for evaluating an energy sharing project in Wallonia.
DIMCE was born from the desire to provide everyone with a tool to assess the profitability of an energy sharing project. DIMCE allows for a detailed analysis of a shared energy project, allowing for the assessment of its relevance. It can simulate photovoltaic, wind, and cogeneration/bio-methanization production. DIMCE is built using OPEN DATA data from Synergrid (consumption profile), PVGIS 5.3 for PV production, and Elia for Walloon wind power. For our comparative studies, we relied... -
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NeuroJSON
Scalable, searchable and verifiable neuroimaging data exchange platfor
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LINE Solver
Queueing Theory Algorithms
LINE is an open-source software package to analyze queueing models via analytical methods and simulation. The solver is available for MATLAB, Java (alpha version) and Python (alpha version). LINE features algorithms for the solution of open queueing systems (e.g., M/M/1, M/M/k, M/G/1, ...), open and closed queueing networks, and layered queueing networks. Additional details are available on the project website: http://line-solver.sf.net.
