Search Results for "python data analysis" - Page 126
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Showing 6383 open source projects for "python data analysis"
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2bRAD-denovo
THIS REPOSITORY HAS BEEN MOVED TO GITHUB
Download the latest updates from https://github.com/z0on/2bRAD_denovo 2bRAD is a method for cost-efficient whole-genome genotyping, described in Wang et al 2012 http://www.nature.com/nmeth/journal/v9/n8/abs/nmeth.2023.html This project is about analyzing 2bRAD data without a genome reference. Scripts and walkthroughs for: - trimming and quality filtering; - removing PCR duplicates; - assembling loci; - calling variants (SNP-wise and haplotype-wise); - recalibrating quality... -
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Manipulation and analysis of psychophysiological data (e.g. peripheral physiology, EEG, MEG). This toolbox has a special focus on time-frequency approaches, including amplitude and phase-synchrony. Developer Project Home: http://www.ccnlab.umd.edu/Psychophysiology_Toolbox/
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It's a web application which provides a unify solution to stat. CVS/SVN repository modules code change information and generate html reports. User can browse line of change, file of change, code diff, check-in comment and so on, it can stat. more repository modules one time. After repository modules configured, stat. is simple like a search.
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Stat cvs/svn Code Change
stat. cvs,svn code changes and generate html report
It's a web application which provides a unify solution to stat. CVS/SVN repository modules code change information and generate html reports. User can browse line of change, file of change, code diff, check-in comment and so on, it can stat. more repository modules one time. After repository modules configured, stat. is simple like a search. It's the mirror project of CodeChangeViewer: http://sourceforge.net/projects/ccv/. -
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ARAP is an Automated RNA-seq Analysis Pipeline for differential expression analysis of RNA-seq data. ARAP is implemented as a PERL script and can run on different Linux computer operating systems.
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Python Scripts For Metex ME-21
Simple scripts for logging data from Metex DVM
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DHOME
Open source home automation web interface to analyze your energy data.
DHOME is an open source web interface that controls your home automation box i.e. Zipabox and gathers data from it to have a complete analysis of your energy consumption. The applications provided by home automation companies do not provide deep analysis of data; they do not give you the opportunity to cross different data, merely to visualize a short presentation of your temperature, electricity consumption and other information. Our goal is to give the user full access to all... -
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wmtsa-python
Discrete wavelet methods for time series analysis using python
Several python libraries implement discrete wavelet transforms. However, none of them, or at least none that I know, is aimed at scientific use. This library aims at filling this gap, in particular considering discrete wavelet transform as described by Percival and Walden. This module started as translation of the wmtsa Matlab toolbox (http://www.atmos.washington.edu/~wmtsa/), so most naming conventions and most of the code structure follows their choices. The code uses a mix of python... -
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MicroView is a 2D/3D image viewer and analysis tool. It is written in Python and uses VTK for all of its graphical capabilities.
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Pi-Heating
Central heating controller for Raspberry Pi (hardware + software)
This is a working replacement for a central heating 'programmer' in a system with a 3-way valve switching hot water between hot water/central heating/both. Software written in Python. PCB layouts are included, and code for the raspberry pi which controls the heating via a web front-end. The project replaces the "junction box" that connects boiler, programmer, pump, motorised valve, and thermostats together and makes most of these software accessible. The Raspberry Pi is connected... -
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xmipp
Image processing suite for Electron Microscopy
XMIPP is an image processing suite for 3D-reconstruction of biological specimens from transmission electron microscopy data. NOTE that stable releases (including binaries) are longer stored at Sourceforge, but are available at http://xmipp.cnb.csic.es -
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PangView
Text Viewer that displays text similar to pango
A text viewer utility that displays text in a pango like markup. The utility is written in python, and uses the pygtk toolkit. The parser reads pango tags similar to html. The utility was written, so formatted text can be displayed quickly. NEW! The parser now is updated to use a faster method of internal data structure. -
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Maxima Bridge System
A system to allow the interaction between Stata and Maxima
Maxima Bridge System is a collection of software programs that allows Stata to interface with Maxima so that Maxima can be used for symbolic computation to transfer data from Stata to Maxima and to retrieve results from Maxima. The cooperation between Stata and Maxima provides an environment for statistical analysis in which symbolic computation can be easily used together with all the facilities supplied by Stata. In this environment, symbolic computation algorithms can be used to manage... -
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OpenSearchServer Extractor
A RESTFul/JSON Web Service for text and metata extraction
An open source RESTFul Web Service for text , meta-data extraction and analysis. oss-text-extractor supports various binary formats: Word processor (doc, docx, odt, rtf) Spreadsheet (xls, xlsx, ods) Presentation (ppt, pptx, odp) Publishing (pdf, pub) Web (rss, html/xhtml) Medias (audio, images) Others (vsd, text) -
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GUItars
GUItars is designed for the analysis of high throughput RNAi data.
Please refer to the original article published in PLOS ONE at http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0049386. GUItars's user-friendly graphical interface enables rapid analysis of RNAi and small molecule screens. GUItars uses SSMD for hit selection, which is preferred for its ability to diminish sample size effects and the false hit rate, making it superior to other widely used HTS analysis methods. The program can handle the analysis for screens without... -
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Yang XML viewer
PyGtk2-based application that shows Yang-models as Treeview
The application uses 'pyang' for creating a XML file and displaying the Yang-model in a Treeview. Additionally it allows to send Netconf requests to a configured target. For this purpose, it uses the Netconf client from [1] or can use an external console too. [1] https://github.com/tail-f-systems/JNC/blob/master/examples/2-junos/netconf-console -
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libltc-delphi
Linear Timecode is an encoding of SMPTE timecode data in an audio sign
Linear (or Longitudinal) Timecode (LTC) is an encoding of SMPTE timecode data in an audio signal, as defined in SMPTE 12M specification. -
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myCStock
An other free stock market software in C++/Python
A parser for real-time update of stock market prices and a graphical interface with technical indicators. It is a small personal project initiated for extending my knowledge in C++ and Python, designing a GUI and, in a next stage, applying mathematical and statistical models to stock market prices analysis and prediction. If you have the same interest than I in experimenting and disussing design software and statistical models in finance, you are welcome to join the project. If you... -
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Python language bindings for the GtkExtra widget set. GtkExtra is a useful set of widgets for the GIMP Toolkit, aka GTK+. It provides a spreadsheet-like matrix widget and widgets for 2-D and 3-D graphing.
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PhyloTrack
PhyloTrack, D3.js and JBrowse for phylogeny and positioning of samples
PhyloTrack is a JavaScript--based software tool that integrates the D3.js library for data visualization with the JBrowse tool for genome browser representation. It requires a phylogenetic tree of the common Newick data format as input, as well as three meta data files for samples, clade-defining nodes and clade color definitions - all in tab delimited format. Functionality within PhyloTrack shows the informative markers at each node in the phylogenetic tree, therefore highlighting clade... -
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iMir
Integrated pipeline for HT miRNA-Seq data analysis
Processing of smallRNA-Seq data to gather biologically relevant information requires application of multiple statistical and bioinformatics tools from different sources, each focusing on a specific step of the analysis pipeline. The analytical workflow can be challenging for the continuous interventions by the operator, a critical factor when large numbers of datasets need to be analyzed at once. To allow a flexible and comprehensive analysis of smallRNA-Seq data we designed a novel modular... -
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labview-frequenzgang
LabVIEW-Projekt zur Frequenzgangmessung
LabVIEW-Projekt zur Frequenzgangmessung, für National Instruments LabVIEW 7.1.1 Benötigte Software: - National Instruments „LabVIEW 7.1.1 für Windows“, http://www.ni.com - Microsoft GW-Basic ( z.B. Commodore GW-Basic ) für MSDOS - Hardware-Treiber, im Verzeichnis „drivers“ mitgeliefert Inhalte des Projekts - Digitalmultimeter mit Microsoft GW-Basic Programm testen - Anbindung eines Funktionsgenerators an LabVIEW - Anbindung von Digitalmultimetern an LabVIEW - Anpassung der... -
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REST4roots
Evaluation software for shovelomics images
Root Estimator for Shovelomics Traits (REST) is a software developed for an automated or semi automated high-throughput analysis of root system traits form high quality RGB pictures. Standardized image acquisition is strongly recommended and briefly described in the manual which you can get here for free http://plantscience.psu.edu/research/labs/roots/publications/overviews/next-generation-shovelomics-set-up-a-tent-and-rest -
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PRADA
PRADA : Pipeline for RNA-Sequencing Data Analysis
Massively parallel sequencing of cDNA reverse transcribed from RNA (RNASeq) provides an accurate estimate of the quantity and composition of mRNAs. To characterize the transcriptome through the analysis of RNA-seq data, we developed PRADA. PRADA focuses on the processing and analysis of gene expression estimates, supervised and unsupervised gene fusion identification, and supervised intragenic deletion identification. PRADA currently supports 7 modules to process and identify abnormalities... -
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BlueSky Open Air Traffic Simulator
BlueSky Open Air Traffic sim, (Windows/Linux/Mac, Python 2.x based)
BlueSky is an Open Air Traffic Simulation for research purposes. It includes only open, license free data for navigation and aircraft performance but is also compatible with BADA 3. Can be used for ATC research or any other aviation or air transport related simulation studies. Is also able to visualize ADS-B traffic. BlueSky commands, and thus the scenario files, are compatible with the TMX simulator in use by NLR and NASA. BlueSky is originally developed, and still moderated, by prof...
