ARAP:Automated RNA-Seq analysis pipeline

Brought to you by: gaox, starmerj

Downloads: 0 This Week

Last Update: 2015-01-29

Browse Code

Get an email when there's a new version of ARAP:Automated RNA-Seq analysis pipeline

ARAP is an Automated RNA-seq Analysis Pipeline for differential expression analysis of RNA-seq data. ARAP is implemented as a PERL script and can run on different Linux computer operating systems.

Project Activity

See All Activity >

Follow ARAP:Automated RNA-Seq analysis pipeline

ARAP:Automated RNA-Seq analysis pipeline Web Site

Other Useful Business Software

Build Agents and Models on One Platform Icon

Build Agents and Models on One Platform

Everything you need to build production-ready agents and models. Access 200+ Google and third-party AI models and tools.

Gemini Enterprise Agent Platform is Google Cloud's comprehensive platform for developers to build, scale, govern, and optimize agents and models. Choose from Google's most advanced models and third-party models like Anthropic's Claude Model Family.

Try It Free

Rate This Project

Login To Rate This Project

User Reviews

Be the first to post a review of ARAP:Automated RNA-Seq analysis pipeline!

Additional Project Details

Registered

2014-07-08

Report inappropriate content

Build Agents and Models on One Platform

Everything you need to build production-ready agents and models. Access 200+ Google and third-party AI models and tools.

Gemini Enterprise Agent Platform is Google Cloud's comprehensive platform for developers to build, scale, govern, and optimize agents and models. Choose from Google's most advanced models and third-party models like Anthropic's Claude Model Family.

Try It Free

Recommended Projects

OmicSelector
Feature selection and deep learning modeling for omic biomarker study
DuffyRNAseq
DuffyRNAseq is an R package that implements an analysis pipeline for processing RNA-seq data from Illumina NextGen sequencers, to measure gene transcription and differential expression.
RNASeq-MATS
MATS is a computational tool to detect differential alternative splicing events from RNA-Seq data. The statistical model of MATS calculates the P-value and false discovery rate that the difference in the isoform ratio of a gene between two conditions exceeds a given user-defined threshold. From the RNA-Seq data, MATS can automatically detect and analyze alternative splicing events corresponding to all major types of alternative splicing patterns. MATS handles replicate RNA-Seq data from both paired and unpaired study design. More information can be found at http://rnaseq-mats.sourceforge.net.
RSeQC
RNA-seq data QC
SpliceJumper
A tool for splicing junction calling from RNA-Seq data