Search Results for "python data analysis" - Page 120
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Showing 6383 open source projects for "python data analysis"
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DIALS
Diffraction Integration for Advanced Light Sources
DIALS is a software toolkit for the analysis of X-ray diffraction data. It is principally focused on integrating macromolecular crystallography data recorded at synchrotrons and free electron lasers and aims to achieve this within a unified programming framework. DIALS is a collaboration between Diamond Light Source, CCP4, MRC LMB in Cambridge and developers at the Lawrence Berkley National Laboratory in California. It is funded from several sources both in Europe and the US. -
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The Dataverse Network is a Java EE5 app that enables researchers to share data on-line. It provides data citation standards, facilitates preservation, distribution and replication of data, and includes statistical analysis. More at: http://thedata.org
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RAMBO-K
Read Assignment Method Based On K-mers
RAMBO-K is a tool for rapid and sensitive removal of background sequences from Next Generation Sequencing data. Please cite our publication (http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0137896) if you use RAMBO-K. We moved to GitLab, please visit our homepage for latest development. The latest stable versions of RAMBO-K will still be provided here. -
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SNMP Simulator is a software that would act like a multitude of real physical devices from SNMP Manager's point of view. Simulator builds and uses a database of physical devices' SNMP footprints to respond like their real counterparts do. Project moved to GitHub: https://github.com/etingof/snmpsim
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PyLogAnalyser
A Python multiplatform tool to filter, colorise and analyse logs
... and difficult b/w logs, speed up the analysis and enhance day to day wearying activities. As common application, you can colorise adb logcat logs taking the example files and using them (and also, filter unnecessary lines). You can INSTALL it from PyPI: $ python -m pip install pyloganalyser -
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MyBeggar
Help to manage current docs (small DMS)
... documents links with provided parameters . You just have to double click on the result, and the system will open it with appropriate software. There is a benefit with this software: you can share data between few different computers and it's available from different OS. By example, you place db and archive directory in shared place, and you can manage it from different computer. (Linux package doesn't work for now, i'm worknig on it) Thanks to let a revie -
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The MeVisLab Community project provides add-on modules that extend the functionality of the MeVisLab software. The modules are provided and maintained by the MeVisLab developer community and can be compiled with the public MeVisLab SDK.
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Whitaker's Words Latin Dictionary
Latin dictionary and grammar aid: Latin to English, English to Latin.
Written in the Ada programming language, William Whitaker's Words Latin dictionary provides definitions and grammatical analysis of words found in Latin texts. It can deduce the dictionary form of a word based on the form actually found in a text. It can handle Latin words, phrases, or whole files. The dictionary contains some 39000 entries, as would be counted in an ordinary dictionary. This may generate many hundreds of thousands of 'words' that one can construct over all the declensions... -
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dbis
DBIS Reference Implementation
Reference implementation of Directory-Based Information Services, described in IETF Internet Drafts, intended to replace NIS and RFC2307. -
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BAIO
Bioinformatics Artificial Intelligence Order
A smart interface of AI that will interrogate and complete your bioinformatics data analysis for you. Download and start your instance of BAIO to join the network of great bioinformatics Minds. -
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The NEDSS Base System (NBS) is a web-based integrated public health disease surveillance system sponsored by the Center for Disease Control and Prevention(CDC). It was developed to provide a NEDSS-standards based system for the secure, accurate, and efficient collection, transmission, and analysis of public health data. It also provides a platform upon which program-specific modules can be built to meet state and program area requirements. State health departments use the NBS...
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optPBN
An optimization toolbox for probabilistic Boolean networks
We introduce optPBN, a Matlab-based toolbox for the optimization of probabilistic Boolean networks (PBN) which operates under the framework of the BN/PBN toolbox from Shmulevich et al. optPBN offers an easy generation of probabilistic Boolean networks from Boolean rule-based modeling and allows for flexible measurement data integration from multiple experiments and a subsequent integrated optimization problem generation which then can be solved with different optimizers. Thereby optPBN allows... -
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iTag
Tag images using various categories and modifiers
... session. Users are able to load a series of Images into a session and add tags on objects on these images within previously defined categories and modifiers. Upon ending the session, result files are produced including (if provided by the EXIF data) the gps information for each Picture, the number of objects in each category and a detailed result file that describes each individual object. In addition, all images that were tagged are saved. -
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Flexbar
flexible barcode and adapter removal for sequencing platforms
Flexbar moved to https://github.com/seqan/flexbar The program Flexbar processes high-throughput sequencing data efficiently. It demultiplexes barcoded runs and removes adapter sequences. Moreover, trimming and filtering features are provided. Flexbar supports next-generation sequencing data in fasta and fastq format, e.g. from the Illumina platform. Reference: Matthias Dodt, Johannes T. Roehr, Rina Ahmed, Christoph Dieterich: Flexbar — flexible barcode and adapter processing for next... -
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aslm
aslm - a slightly modified asl-module
aslm is an object orientated toolbox written in MATLAB. It was developed for common tasks associated with the analysis of arterial spin labeling (ASL) and other MRI data. Portions of the code rely heavily on (or are copied from) SPM (http://www.fil.ion.ucl.ac.uk/spm), marsbar (http://marsbar.sourceforge.net, Matthew Brett et al.), and GIFT (Group ICA of fMRI Toolbox v.1.3, http://mialab.mrn.org/software/gift/ )which are also released under the GNU public licence. The ASL subtraction-routine... -
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cimgexplorer
Exploration and analysis program for (scientific) images
CImgExplorer is an exploration and analysis program for (scientific) intensity images. It shows floating-point and integer intensity images in a false-colour display and allows range adjustment, zooming, histogram optimisation, and simple evaluation. Reads most formats using GDAL. -
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ForceReader
Soft for force spectroscopy data analysis
A simple Windows application for data of atomic force spectroscopy (force-distance curves) analysis. It is adopted for Veeco/Bruker Picoforce file format, but it is possible to use it for analysis of txt-table data. -
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QuantitativeT2
Glioblastoma in mouse brain analyzed by QuantitativeT2
This video clip shows the analysis of a normal mouse brain by QuantitativeT2, a software tool recently developed by TS Ali (more information can be found at: Ali T, Bjarnason T, Senger DL, Dunn JF, Joseph JT, Mitchell J; Quantitativet2: interactive quantitative t2 mri witnessed in mouse glioblastoma. J. Med. Imag. 0001;2(3):036002. doi:10.1117/1.JMI.2.3.036002.). It is written in XCode. The MRI data was acquired using Bruker 9.4T, 128 T2 echoes were collected for 128x128 image matrix. -
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An online platform for emotion analysis, classification and risk perception analysis in social media data. The platform is a step further towards bridging the gap between: Emotion classification and analysis on one side, and risk perception dissemination analysis on the other side. The platform core values are: - Open source - Ease of use - Extensibility and flexibility
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ipcvis
Visualize Inter Process Communication
Small python script that can visualize Inter Process Communication on Linux. It can create a graph of TCP and Unix sockets, pipes and also process hierarchy. Short (59 sec) demo visualizing ssh client connecting to ssh server on the same Ubuntu host: http://youtu.be/8XFKwzkexQY Longer (2 min 13 sec) demo visualizing ZoneMinder surveillance solution operation (stopping, starting, enabling and viewing camera): http://youtu.be/kM7klE61Ibk Tested on Ubuntu 14.10 and Debian 7. Quick... -
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A Tool for Retrieval, Visualization and Analysis of biological Pathways. Import a Gene or Protein Set from any Excel file. Automatically find signaling Pathways from KEGG. Integrate your Data in Seconds with a live interactive Force-directed Layout.
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dpcReport
Standalone GUI for dPCR experiments
Standalone GUI for dPCR experiments. This application launches a graphical user interface that generates reports from digital PCR data. -
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Based on PyQwt (plotting widgets for PyQt4 graphical user interfaces) and on the scientific modules NumPy and SciPy, guiqwt is a Python library providing efficient 2D data-plotting features (curve/image visualization and related tools) for interactiv
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Savsoft Quiz v2.0
Savsoft Quiz is an Open Source Quiz Management Web Application
Savsoft Quiz v2.0 is a php based open source web application to create and manage online quiz, test, exam on your website. To read terms and condition please visit: http://savsoftquiz.com/ -
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GRASPER
Repetitive structural variation caller using short paired-end reads
WE HAVE MOVED TO A GIT REPO. Please go to https://github.com/COL-IU/GRASPER GRASPER (Genome Rearrangement Analysis using Short Paired-End Reads) is a de novo structural variation (SV) calling software that is capable of detecting repetitive SVs. It constructs A-Bruijn graphs to capture approximate repeats within a reference genome then SVs are detected on the graphs. GRASPER requires a reference genome sequence in a FASTA formatted file along with a Illumina paired-end...
