Search Results for "python data analysis" - Page 110
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Showing 6383 open source projects for "python data analysis"
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Card Raytracer Benchmark
Short C++/Java/C#/Python benchmark
This is a short C++/Java/C#/Python benchmark. Based on Paul Heckbert's sources. Thank you Paul! -
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ngs-suite
A set of NGS tools for DNA-seq and BS-seq
ngs-suite aims is to collect a set of fast and well written C++11 software to handle analysis and manipulation of NGS short reads. It works with DNA-seq and BS-seq data. -
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QuickNGS
Next-Generation Sequencing workflow system
QuickNGS is a software for efficient and highly reproducible data analysis for Next-Generation Sequencing. -
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The Maltcms - Modular Application Toolkit for Chromatography Mass-Spectrometry is a JAVA API for preprocessing, alignment, analysis and visualization of data stored in open file formats used in Proteomics and Metabolomics research.
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AndroidSwissKnife
Program to make static analysis for Android APKs in python
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littletable is a lightweight in-memory data manager of collections of Python objects, providing ORM-like access for querying and joining data using object attributes as pseudo-columns.
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Priority Estimation Tool (AHP)
PriEsT is a decision making tool for Analytic Hierarchy Process (AHP).
Priorty Estimation Tool (PriEsT) is a decision analysis tool. You can use it for ranking the options you have, or alternatively, you may use it for resource allocation (budgeting) problems. In PriEsT, you enter a list of available options and then define your criteria for prioritization. After defining criteria, PriEsT allows you to enter your judgements against each criterion, which are then used to calculate the final ranking (or weights). Please cite this if you find it useful... -
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fb2combiner
This program allows embedding books in fb2 format in one, super-book.
Fb2Combiner builds a collection of fb2-formatted books in one container (also in fb2 format). Each book is embedded as a chapter. -
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PExFInS
Post-GWAS Explorer for Functional Indels and SNPs
... hand, the biological information encoded in human genome, such as regulatory features from the Ensembl regulatory database, will be conductive in pinpointing functional causal variant(s) for the disease association. Thus, we generated a pipeline, PExFInS to integrate our LCL cis-eQTL data, along with publicly available cis-eQTL datasets derived from lung tissues, human monocytes, dendritic cells, blood, and LCLs. -
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Taurus
A python based User Interface library.
The Taurus Project has *moved* to: https://github.com/taurus-org/taurus This SourceForge page is *outdated* and kept for historical reference only. Taurus is a python framework for control and data acquisition CLIs and GUIs in scientific/industrial environments. It supports multiple control systems or data sources: Tango, EPICS, ... New control system libraries and data sources can be integrated through plugins. -
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mirPRo
Tool for miRNA-seq analysis in C++
mirPRo is a tool for miRNA-seq analysis. It can quantify known and novel miRNAs in single-end RNA-seq data and provide useful functions such as IsomiR detection and "arm switching" identification, miRNA family quantification, and read cataloging in terms of genome annotation. mirPRo only works for species that has reference genome. [1] Who are we? Please visit our website http://bioinfolab.miamioh.edu [2] How to cite mirPRo? Shi J, Dong M, Li L, Liu L, Luz-Madrigal A, Tsonis PA... -
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SUPER-FOCUS
A tool for agile functional analysis of shotgun metagenomic data.
SUPER-FOCUS, SUbsystems Profile by databasE Reduction using FOCUS, an agile homology-based approach using a reduced SEED database to report the subsystems present in metagenomic samples and profile their abundances. The tool was tested with over 70 real metagenomes, and the results show that our approach accurately predicts the subsystems present in microbial communities, and it can be up to over 1,000 times faster than other tools. -
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CoverageAnalyzer
RNA modification detection by RT signatures in deep sequencing data
.... Consequently, the community will profit from a platform seamlessly connecting detailed visual inspection of RT signatures and automated screening for modification candidates. CoverageAnalyzer was developed in response to the demand for a powerful inspection tool, running on all 3 OSes. With SAM standard as input and an intuitive GUI, even non-experts can accomplish a variety of tasks, from visualization of RNA Seq data, up to sophisticated modification analysis with significance-based candidate calling. -
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Reactive Extensions for JavaScript
An API for asynchronous programming with observable streams
An API for asynchronous programming with observable streams. The Observer pattern done right. ReactiveX is a combination of the best ideas from. The Observer pattern, the Iterator pattern, and functional programming. ReactiveX is everywhere, and it's meant for everything. Available for idiomatic Java, Scala, C#, C++, Clojure, JavaScript, Python, Groovy, JRuby, and others. Embrace ReactiveX's asynchronicity, enabling concurrency and implementation independence. Manipulate UI events and API... -
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Gitinspector
The statistical analysis tool for git repositories
Gitinspector is a statistical analysis tool for git repositories. The default analysis shows general statistics per author, which can be complemented with a timeline analysis that shows the workload and activity of each author. Under normal operation, it filters the results to only show statistics about a number of given extensions and by default only includes source files in the statistical analysis. This tool was originally written to help fetch repository statistics from student projects... -
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GreenHop
Energy and environmental monitoring of the server room
The solution GreenHop aims to perform energy and environmental (temperature, humidity, dew point and atmospheric pressure) monitoring of the Data Center server room, providing energy efficiency indicators through green metrics for Data Centers. The GreenHop solution is based on open source software and hardware. The approach of using open source solutions enables its deployment easier and independently of suppliers at the same time makes the solution scalable to the needs of each... -
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Pathway-PDT
Pathway-PDT: A Flexible Pathway Analysis Tool for Nuclear Families
Pathway analysis based on Genome-Wide Association Study (GWAS) data has become popular as a secondary analysis strategy. Although many pathway analysis tools have been developed for case-control study, there is no tool that can use all information from raw genotypes in general nuclear families. We developed the Pathway-PDT, which uses the framework of Pedigree Disequilibrium Test (PDT) for general family data, to perform pathway analysis. Availability and implementation: Pathway-PDT... -
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Raspberry Pi Relay Controller
Raspberry pi Python relay code
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Acid
Python module for parsing and analyzing binary data files
Acid is a module and a simple application for displaying content of binary data files. It relies on plugins for parsing file formats. -
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PhyloPart
automated partition of phylogenetic trees
Understanding the determinants of virus transmission is a fundamental step for effective design of screening and intervention strategies to control viral epidemics. Phylogenetic analysis can be a valid approach for the identification of transmission chains, and very-large data sets can be analysed through parallel computation. Here we propose and validate a new methodology for the partition of large-scale phylogenies and the inference of transmission clusters. This approach, on the basis... -
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pybrn is a Python package for the analysis of biochemical reaction networks. It provides basic model handling capabilities, import from SBML, analysis of conservation relations, steady state computation and model simulation.
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Python Variable Variables Manager
a python manager class for named variables (variable name is variable)
Addressing the question for variable variables in python (i.e. variables with variable names), which has been posed on stackoverflow: http://stackoverflow.com/questions/1373164/how-do-i-do-variable-variables-in-python The consensus is to use a dictionary for this. This is a good idead, however, there are many aspects arising from this: * you'll yourself be responsible for this dictionary, including garbage collection (of in-dict variables) etc. * there's no locality for variable... -
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PANTHER project: software for modeling of protein sequence and function evolution, and tools for applying these data to the analysis of genome data, expression data and coding SNPs. Details available at http://www.pantherdb.org.
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SURCOMED
SUrvival COmbined effect-driven cancer MEchanism Discovery
Survival analyses based on the Kaplan-Meier estimate have been pervasively used to support or validate the relevance of biological mechanisms in cancer research. Recently, with the appearance of gene expression high-throughput technologies, this kind of analysis has been applied to tumour transcriptomics data. In a ‘bottom-up’ approach, gene-expression profiles that are associated with a deregulated pathway hypothetically involved in cancer progression are first identified and then subsequently...
