Search Results for "python data analysis" - Page 108
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Showing 6378 open source projects for "python data analysis"
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Discharge
Fourier analysis of discharge data in R
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SmartRoot
Semi-automated root image analysis software
... to specific research requirements. SmartRoot is an operating system independent freeware based on ImageJ and uses cross-platform standards (XML, SQL, Java) for communication with data analysis softwares. To cite us: Guillaume Lobet, Loïc Pagès and Xavier Draye. A Novel Image Analysis Toolbox Enabling Quantitative Analysis of Root System Architecture. 2011 Plant Physiology, Vol. 157 -
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CellPD
Cell Phenotype Digitizer
This is an open source project to estimate cell cycle and other parameters based upon experimental time course data. Navigate to Files-->CellPD-->[version]-->[Operating System] Each download contains CellPD's source code, a Python virtual environment, and a tutorial on how to use CellPD. Tutorial TL;DR: Save your data (using the provided template) in the same folder as CellPD, then double click on runCellPD. -
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experix laboratory control system
instrument control, data acquisition display and analysis
Experix is a command-line driven environment for laboratory data acquisition and device control and graphical presentation and analysis of data. Written in C for GNU-Linux . Tested on PC and Raspberry Pi. The core is written very generally in order to support applications by means of script files. Device interfaces: PCMCIA daq (2 devices tested) via kernel module with interrupt handler and memory-mapped data; USB daq (1 device tested) using libusbx; running an equipment servicing program via... -
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RTToolbox
Library to support quantitative analysis of radiotherapy data
Moved to: http://github.com/MIC-DKFZ/RTTB RTToolbox is a software library, developed at the DKFZ to support quantitative analysis of treatment outcome for radiotherapy. The RTToolbox was designed following object-oriented design principles and was implemented in the language C++. It supports the import of radiotherapy data (e.g. dose distributions and structure sets) from DICOM-RT format and other standard image processing formats by using a bridge to ITK. The RTToolbox supports... -
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AXYZ
Newsfeed aggregator
The article explains the design and the characteristics of a new open source content aggregation system. Among the features of the program, stands out a new processing engine of syndication channels, monitoring capability of information recovery in real time, the possibilities of the configuration of aggregator behavior, automatic classification of contents and new models for representation of information from relational interactive maps. On the other hand, the aggregation program, which... -
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Short-3DXRD
Data analysis package for 3D-XRD
Please contact the authors by sending a message (via https://sourceforge.net/users/rmhuizenga). We will be glad to send you the programs. -
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ERP is a project aimed at providing data analysis tools for the processing of event-related potentials (ERPs), which are signals derived from the human electroencephalogram. The project contains a class library and a suite of programs.
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ws2300
Python driver for the LaCrosse WS-2300
Ws2300 manipulates the LaCrosse WS-2300 weather station via its RS232/USB interface. It can read and write values, and can continuously log data from WS-2300 to a file or SQL database. All available documentation can be read online at http://ws2300.sourceforge.net/ -
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PyGlossary
A tool for converting dictionary data files aka glossaries
The SourceForge page is not updated anymore Please use: https://github.com/ilius/pyglossary -
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The VPT2-screened PyVCI program package is a general purpose open-source code for simulating accurate molecular spectra, based upon force field expansions of the potential energy surface in normal mode coordinates. It includes harmonic normal coordinate analysis, vibrational perturbation theory and vibrational configuration interaction (VCI) algorithms, with VCI matrix elements chosen iteratively according to VPT2 energy contributions, across a range of significance thresholds
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Gene-Environment iNteraction Simulator 2
A tool able to simulate gene-environment and gene-gene interactions.
Gene-Environment iNteraction Simulator 2 (GENS2) simulates interactions among two genetic and one environmental factor and also allows for epistatic interactions. GENS2 is based on data with realistic patterns of linkage disequilibrium, and imposes no limitations either on the number of individuals to be simulated or on number of non-predisposing genetic/environmental factors to be considered. The GENS2 tool is able to simulate gene-environment and gene-gene interactions. To make... -
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Websocket Server in a Pure Data patch
a single patch for direct communications between Pd and web browsers
NEW : pd-vanilla version requiring only mrpeach external library ! download link (and notes) : https://sourceforge.net/projects/websocketserverinapatch/files/ "websocket-server in a patch.pd" single Pd file contains a reusable and fully documented websocket server, meant as an easy way to experiment with Pure Data <-> web-browsers communications through websockets, without the need of other software (like node.js or python) or any specific external to compile (just one deken library... -
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AmpliMethProfiler
CpG methylation analysis of amplicons from bisulfite sequencing
ampliMethProfiler tool provides an easy and user friendly way to extract and analyze the epihaplotype composition of reads from targeted bisulfite sequencing experiments. Specifically, ampliMethProfiler provides an easy and user friendly way to extract and analyze the epiallelic composition of reads from targeted bisulfite sequencing experiments. ampliMethProfiler is written in python language and requires a local installation of BLAST and QIIME tools. It can be run on Linux and OS X... -
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PBSuite
Software for Long-Read Sequencing Data from PacBio
This currently hosts two projects created and maintained by Adam English. PBJelly - the genome upgrading tool. PBHoney - the structural variation discovery tool Both are contained within the PBSuite code found in downloads. ----- PBJelly ----- Read The Paper http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0047768 PBJelly is a highly automated pipeline that aligns long sequencing reads (such as PacBio RS reads or long 454 reads in fasta format) to... -
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CAN Bus Logger
Logging CAN bus traffic on SD card
Usually professional tools like Vector, Softing, ETAS or DSPACE are used to log the CAN bus traffic in a vehicle or industrial setup. In some usecases, the data have to be converted to some other analysis tools like MatLab, Excel, SCILab or some free MatLab clones. With this cheap Arduino-based setup, it is possible to define messages and signals to be logged on the SD card. The measurement can be started and stopped by Bluetooth connection via handy. -
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PMM-Lab
Predictive Microbial Modeling plug-in for KNIME
PMM-Lab is an open-source extension to the Konstanz Information Miner (KNIME). It consists of three components: • a library of KNIME nodes (called PMM-Lab), • a library of “standard” workflows • an HSQL database.to store experimental data and microbial models. Altogether these components are designed to ease and standardize the statistical analysis of experimental microbial data and the development of predictive microbial models (PMM). Users can apply PMM-Lab to proprietary or public data... -
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Cambridge Rocketry Simulator
Simulate high power rocket flights with splash down plots
This software allows you perform six degree of freedom simulations of High Power Rocket (HPR) and model rocket flights. Parachute descent is also simulated. 3D flight trajectories are produced as well as detailed tabular flight data. Running in Monte Carlo mode allows generates multiple possible flight paths and splash down plots, indicating the probability of landing in an area. Peer-reviewed publication in the Journal of Open Research Software (JORS) http://doi.org/10.5334/jors.137... -
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Abandon Call Monitoring Tool
Monitor Abandon and Short Duration Calls using Avaya TSAPI library
This monitoring tool uses Avaya TSAPI library, it monitors incoming calls from Avaya VDN and display the abandon and short duration calls information for call center operation. It writes call information data to Splunk so you can analysis call center traffic pattern and details. -
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Smart-M3 is a functional platform that provides a cross domain search extent for triple based information. Smart-M3 enables smart cross domain applications that rely on information level interoperability.
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This project houses software to analyze data acquired from electrophysiology experiments. Currently, we have an Octave/MATLAB program to analyze electroneurogram traces of coupled oscillators, and a Perl library for the analysis of voltage trace data
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Colloquium QDA
A free and open source qualitative ethnographic interview coding tool.
Colloquium QDA is a tool for custom coding and analyzing qualitative ethnographic interviews. To run, make sure you first have JRE 8 or later installed (http://www.oracle.com/technetwork/java/javase/downloads/). Colloquium QDA is an open source cross-platform Java Swing app utilizing an embedded Java DB with Lucene integrated search. -
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JCLTP
A Java Class Library for Text Processing
JCLTP is a class library designed for processing text. JCLTP is free, open source and developed with the Java programming language. JCLTP is distributed under the GNU license. It incorporates several technologies that enable process information while applying AI techniques, in order to build predictive models for text classification. Through a flexible structure of interfaces and classes, the opportunity to extend, adapt and add functionality JCLTP is provided. Thus, analysis of new types... -
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Crazy Eddies GUI System (CEGUI)
A fast, powerful and adaptable GUI solution
Crazy Eddie's GUI (CEGUI) system is a graphical user interface C++ library. It was designed particularly for the needs of videogames, but the library is usable for non-game tasks, such as any other type of applications (rendering/visualisation/virtual reality) and tools. It is designed for user flexibility in look-and-feel, as well as being adaptable to the user's choice in tools and operating systems. Established in 2003, CEGUI sees continual, active development and remains one of the... -
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... by paragraphs or by textual data blocks. A block is a sequence of textual data (not a complete paragraph) that is extracted from the XML file. The results of these extracted parts can be saved into simple text files for further analysis, which may incorporate searching for these parts in a RAM dump.
