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Showing 6378 open source projects for "python data analysis"
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Needle
The iOS Security Testing Framework
Needle is an open-source, modular framework to streamline the process of conducting security assessments of iOS apps. Needle was originally made to work with iOS 9 and iOS 10. Since then, Frida was released and become the defacto tool to use with mobile security assessments. Some common Frida mobile security scripts were later implemented within Needle, as some of these scripts worked better or addressed some issues that were present in Needle's custom tooling. Assessing the security of an... -
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A comparative synteny analysis tool for target-gene SNP marker discovery: connecting genomics data to breeding in Solanaceae * The foundation of this web source is CodeIgniter. * After setting the CodeIgniter framework, unzip it under the default home directory. The database is based on Maria DB (mysql). Download the schema and import it into the DB. Each species you want to analyze needs blast results. Fit the fields to match the schema and it will work.
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Construct2D
COmputational fluid dyNamics STRUctured grid CreaTor for 2D airfoils
Construct2D is a grid generator designed to create 2D grids for CFD computations on airfoils. The grids are generated in Plot3D format. The only required input file is the set of coordinates defining the airfoil geometry, using the same format as XFoil, the popular vortex-panel code for airfoil analysis. Construct2D can create grids with O topology (recommended for airfoils with a blunt trailing edge) or C topology (recommended for airfoils with a sharp trailing edge). Now available... -
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HCS Analyzer
High Content Screening Analyzer
HCS Analyzer is an open source software dedicated to High Content Screening data processing and analysis. -
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Calculation of camshafts - allows to define a camshaft profile on the set trajectory which should provide the given mechanism. The trajectory can be set graphically, co-ordinates or function.
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Peptrix
Label free peptide profiling
Peprix is a software application for label-free peptide profiling written in Java, using a MySQL database. Peptrix is able to detect and identify significantly differentially expressed peptides in peptide profiles obtained from body fluids of patient and control groups. The presented modular software is capable of central storage of mass spectra and results in fast analysis. The software architecture consists of 4 pillars 1) a Graphical User Interface written in Java, 2) a MySQL... -
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Network software for annotation and quality control of distributed data. Supported by NSF: DBI 0646266 and NSF: DBI 0960535. http://wiki.filteredpush.org
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BisSNP
Bisulfite-seq/NOMe-seq SNPs & cytosine methylation caller
Now in Github: https://github.com/dnaase/Bis-tools/tree/master/Bis-SNP BisSNP is a package based on the Genome Analysis Toolkit (GATK) map-reduce framework for genotyping in bisulfite treated massively parallel sequencing (Bisulfite-seq, NOMe-seq and RRBS) on Illumina platform. It uses bayesian inference with either manually specified or automatically estimated methylation probabilities of different cytosine context(not only CpG, CHH, CHG in Bisulfite-seq, but also GCH et.al. in other... -
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AnyWave is a multi-platform software designed for neurologists and researchers who want to visualise and apply signal processing on electrophysiological signals. AnyWave can handle EEG, SEEG, MEG and more. MATLAB/Python/C++ plugins can be added. See this wiki section to learn how to build AnyWave on Linux : http://meg.univ-amu.fr/wiki/AnyWave:BuildSDK
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OmniGraffle Stencil for TRAK
Simple, pragmatic enterprise architecture for the mobile
Stencil for Omnigraffle drawing tool (Mac & iPad) to enable architecture description views to be created for the TRAK Enterprise Architecture Framework (available on Sourceforge via the trak, trakmetamodel and trakviewpoints projects). Provides the set of shapes and connectors needed to create TRAK views to describe the enterprise, concepts, systems and how they're procured. Using the stencil in conjunction with the defining TRAK documents you can be up and creating architecture... -
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GENSENG
GENSENG is a software detecting CNVs from NGS data
GENSENG is a software detecting CNVs(Copy Number Variations) from NGS(Next Generation Sequencing) data. We have uploaded the data preparation codes. Please download it from Files folder. -
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Seq2seq Chatbot for Keras
This repository contains a new generative model of chatbot
This repository contains a new generative model of chatbot based on seq2seq modeling. The trained model available here used a small dataset composed of ~8K pairs of context (the last two utterances of the dialogue up to the current point) and respective response. The data were collected from dialogues of English courses online. This trained model can be fine-tuned using a closed-domain dataset to real-world applications. The canonical seq2seq model became popular in neural machine translation... -
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lr2rmats
Long read to rMATS
lr2rmats is a Snakemake-based light-weight pipeline which is designed to utilize both third-generation long-read and second-generation short-read RNA-seq data to generate an enhanced gene annotation file. The newly generated annotation file could be provided to rMATS for differential alternative splicing analysis. More information can be found at https://sourceforge.net/p/lr2rmats/wiki/Home/ -
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This site hosts the source code for C++ version of the Broker for SBW, NOM module, advanced simulation suite, analysis applications and model editors.
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UAV Drone
Airborne avionics platform for drone system identification and control
UAV Drone is a suite of software and hardware which is hosted on Raspberry Pi for the purpose of drone system identification/mathematical modelling and control law development. This platform measures critical aerospace measurements of Pitch, yaw, Roll via AHRS, location through GPS, and air data through Pitot Static system. Control of the drone is provided through user developed Control law based on critical aircraft parameters to 16 configurable PWM outputs to servos or motors controllers... -
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Call Analytics for Avaya
Monitor Avaya VDN, ACD and extension objects for call analytics
Call Analytics tool is a server program that monitors Avaya VDNs, ACD Hunt Groups and Extension objects, it extracts useful information from monitoring events and outputs call and agent records for applications such as reporting, wallboard integration and call log analysis. The Call Analytics tool is a CTI reporting and real time monitoring engine and it is an ideal tool when CMS is not in placed for call center environment. -
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regression-plot
python module to create plots for linear and logistic regression
The module offers one-line-functions to create plots for linear regression and logistic regression. You can spot outliers, and judge if your data is really suited for regression. The code is built upon matplotlib and looks good with seaborn.set_style("whitegrid") -
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SmartMuseum
Software for work with Corpus of Everyday life history Sources
Everyday life history is becoming of high interest due to the growing amount of various historical sources related to common human being. Analysis of such sources needs considering them as interrelated. Evaluation of such relations leads to meaningful results for different groups of information consumers: from professional historians and experts from close humanitarian sciences to common people, interested in everyday community life. Corpuses of everyday life history sources are being... -
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DualTranscriptDiscovery
Transcript-discovery approach for gene feature delimitation by RNA-seq
This project contains Python scripts usable for a dual transcript-discovery approach that improves the delimitation of gene features from RNA-seq data in the chicken model. Documentation: http://bio.biologists.org/content/biolopen/suppl/2018/01/17/bio.028498.DC1/BIO028498supp.pdf Citation: Orgeur M., Martens M., Börno S. T., Timmermann B., Duprez D. and Stricker S. (2018). A dual transcript-discovery approach to improve the delimitation of gene features from RNA-seq data in the chicken... -
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Flask JSONDash
Build complex dashboards without any front-end code
... supports templates and iframes. Only a basic intuitive configuration is required. The dashboard layout and blueprint styles are pre-packaged, and provide only the essentials, while getting out of the way. Drag-and-drop your layout easily and intuitively. Multiple layout modes - bootstrap grid-based or totally freeform. Data utilities for munging and manipulating data suitable for various charts. -
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fcGENE: Genotype format converter
Format converting tool for genotype Data (e.g.PLINK-MACH,MACH-PLINK)
Main application is twofold: first to convert genotype SNP data into formats of different imputation tools like PLINK MACH, IMPUTE, BEAGLE and BIMBBAM, second to transform imputed data into different file formats like PLINK, HAPLOVIEW, EIGENSOFT and SNPTEST. Readable file formats: plink-pedigree (ped and map), plink-raw, plink-dosage, mach , minimac, impute, snptest, beagle and bimbam. Similarly all kinds of imputation of outputs are also accepted. Formats which can be generated... -
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UmUTracker
A MATLAB program for 2D particle tracking or 3D DHM based tracking.
... fix & Blob detection functions. Please visit our homepage for more information: http://www.physics.umu.se/english/research/biological-physics/the-biophysics-and-biophotonics-group/ *Please cite our work using the following information: Zhang, H., T. Stangner, K. Wiklund, A. Rodriguez, and M. Andersson. 2017. UmUTracker: A versatile MATLAB program for automated particle tracking of 2D light microscopy or 3D digital holography data. Comput. Phys. Commun. 219: 390–399.
