Search Results for "genes" - Page 10
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Showing 254 open source projects for "genes"
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GenMAPP is an application designed to visualize genomic data on maps representing biological pathways and other groupings of genes. GenMAPP also includes tools for performing global analysis of genomic data in the context of the Gene Ontology hierarchy.
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A simple Java application for the analysis and identification of gene networks. ProPesca takes as input shorts temporal series of realtime-PCR expression levels and it clusters genes that exhibit either similar or specular behaviors.
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FACT
Annotate & interpret your high-throughput experiment
The Functional Annotation and Correlation Tool allows the meta-analysis of data from high-throughput experiments (typically microarrays) by annotating (clones, genes, GeneOntology, location, etc.) and correlating data sets to identify important patterns. -
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The SigTerms software tool is a set of Microsoft Excel macros for use in linking functional gene class associations to an input list of genes.
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EST Express is an open-source, cross-platform web server application that imports sequences from cDNA libraries and provides several layers of annotation based on Entrez Gene to allow the user to highlight useful genes and manage cDNA library projects.
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HaploGeneMapper is a tool to visualise the genomic proximity of haploinsufficient genes to segmental duplications on a chromosome-by-chromosome basis.
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Java aplication that helps genetic engeneers to simulate the outcome of experiments (electroforesis, DNA cloning and cleavage), search for specific sites in DNA sequence, draw DNA maps with features: protein and regulation genes, restriction sites
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TRANSFOG DAS (Translational and Functional Onco-Genomics Distributed Annotation System) is an XML-based annotation system to allow the discovery and analysis of candidate genes potentially involved in cancer onset and progression.
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A personal genealogy application for use on (primarily) Linux systems. Data is read from a GEDCOM file and shown in a GUI. This project is still in alpha, so any help is welcome.
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QTL Reaper analyzes data from progeny of a genetic cross in experimental plants or animals. It seeks the location of genes that affect a heritable trait, and it is specially designed for analysis of gene expression measurements.
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Disease Gene Profiler (DGP) comprises of a set of (bioinformatics) tools that can be used to identify the genes underlying susceptibility to common multifactorial diseases (such as diabetes, asthma and cancer) using freely available datasources.
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Find restriction enzymes that help differ known homologe DNA sequences (RFLP). Simulate electrophoresis gels. Usefull to investigate the diversity of a population by one of their common genes. Written in perl, uses bioperl modules and the GD library.
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FacScan is a predicting tool of transcription factor binding sites. FacScan scans multiple DNA sequences, e.g. from microarray experiments, for potential binding sites of regulatory transcription factors. Common sites shared by the genes will also b
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Molecular Genetics Explorer is a package of applications that provide virtual laboratories with which students can explore Mendelian genetics, the construction of proteins from genes, and the (simulated) biochemical activity of those proteins.
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Current Comparative Table is a bioinformatics tool for running searches (like BLAST) with large sets of genes. It creates a table that allows you to view many results in many databases and downloads databases daily to ensure the most up-to-date results.
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MeSHer is a Java tool for biological literature mining. MeSHer performs a statistical analyis of MeSH (medical subject headings) terms to find over-represented biological themes in a given sample of genes as compared with a population of genes.
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Pond Scum
Evolution Simulator.
An Evolution Simulator of Single Cells in a Pond. This shows a crosssection of water with sun shining from above. A single cell is dropped in and has various genes. The cells multipy and evolve. See Files above for download and screenshot. -
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The Comparative Toxicogenomics Database (under development) will be a publicly-available, web-based database of genes and proteins of human toxicological significance. It is being developed using an Oracle 9i database, Tomcat, and Python.
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GenomePixelizer is a program for comparative genomics, detection of duplication events in genomes, tracking the "footprints" of evolution. It may be considered as a drawing tool that generates custom images of genomes out of the given set of genes.
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PhyloGrapher is a program designed to visualize and study evolutionary relationships within families of homologous genes or proteins (elements). PhyloGrapher is a drawing tool that generates custom graphs for the given set of elements.
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Zeeble Bug is a basic A-life program designed for lava-lamp style desktop viewing of a pond filled with "bugs". It employs a simple neural networks, genes, and varied water conditions to keep the pond a shifting and evolving entity.
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Domigene is a genetic algorithm API attempting to incorporate dominant and recessive genes. Supports modular evolution types, genetic programs, definable instruction sets, variation in population, chromosomes, mortality, mutation, fitness functions.
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DEODAS designs & analyzes consensus-degenerate oligonucleotide probes for biological research. DEODAS automatically designs and screens, probes against databases of known genes & stores the information in a searchable database.
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TreeFam
Database of phylogenetic trees of animal genes