Compneuro

This is a list of open source software projects that Compneuro is associated with:

• ABioNLP ABioNLP tool - A Biological Natural Language Processing Tool for Systems Biology, Translational science and Medicine. This tool is part of the paper "Mining Scientific Articles for Inter-Relationships and Visualisation: Natural Language Processing for Systems Biology Modeling" by Nidheesh Melethadathil, Priya Chellaiah, Jaap Heringa, Bipin Nair and Shyam Diwakar. Last Updated: 2023-09-16
• Amrita-Neuron-Simulator A graphical web-based Neuron simulator (implemented on JS) and models neuronal spiking dynamics replicated in the soma or in a section of excitable neuronal membrane using the Hodgkin-Huxley equations. Developed as a virtual lab, several experiments on vlab.amrita.edu will be based on this educational tool. This JS based implementation allows simulating HH-style dynamics, AdEx integrate and fire neuron models. Last Updated: 2023-09-16
• Cerebellum Granule Neuron model This is a detailed NEURON Model for a cerebellum granule cell. Last Updated: 2020-09-14
• DLCISNN Cerebellum-inspired spiking neural network(DLCISNN), a hybrid of Spiking Neural Network and Deep learning networks with the architecture and firing behaviour inspired from cerebellar microcircuitry. Last Updated: 2023-09-16
• LFPsim Simulation scripts to reconstruct Local Field Potentials (LFP). Last Updated: 2023-07-28
• PD_BiochemicalSystemsTheory A model of Parkinson’s disease using biochemical systems theory Last Updated: 2019-02-07
• PD_BiochemicalSystemsTheory Major pathways involving in Parkinson's disease (PD) such as alphasynuclein aggregation, dopamine synthesis, lewy body formation, tau phosphorylation, parkin, and apoptosis were modeled using stochastic differential equations. Pathways were modeled and simulated using the biochemical pathway visualization program CellDesigner, a modeling tool for gene-regulatory and biochemical networks that support graphical notation and listing of symbols. The model allows a qualitative analysis of PD and a key signalling pathways for evaluating PD treatment conditions relating pathophysiology to molecular concentration changes recorded in experiments. Last Updated: 2023-09-16
• Reconstructing cerebellar evoked LFP ReConv algorithm for cerebellum LFP reconstruction Last Updated: 2017-02-10
• TCOB_Neuron TCOB is a constrained-object programming language Last Updated: 2024-03-06