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biotelerock made 1 file-release changes.
2009-11-11 16:34:01 UTC by biotelerock
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biotelerock made 1 file-release changes.
2009-10-30 19:29:02 UTC by biotelerock
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biotelerock made 1 file-release changes.
2009-10-26 18:38:01 UTC by biotelerock
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biotelerock made 1 file-release changes.
2009-10-14 16:59:01 UTC by biotelerock
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Sorry, about the garbled message - here again:
Example output for "-b 1500" option
chr10 374751 375342 0.0
204404 73 NM_212479 chr10 170642 285200 + 170642 Closest
204404 73 NM_006624 chr10 170642 290576 + 170642 Closest
chr10 1300976 1301497 1.0
105529 594 NR_015376 chr10 1195707...
2009-09-30 00:17:39 UTC by denizk
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Just wanted to show an example:
Example output for "-b 1500" option
chr10 374751 375342 0.0
204404 73 NM_212479 chr10 170642 285200 + 170642 Closest
204404 73 NM_006624 chr10 170642 290576 + 170642 Closest
chr10 1300976 1301497 1.0
105529 594 NR_015376 chr10 1195707 1200611 + 1195707 Closest...
2009-09-30 00:16:22 UTC by denizk
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Hi,
I've been working with the FindNeighboringGenes tool and trying to limit the neighborhood with the -b option. However it seems that genes even far outside of this boundary are reported. Is that a bug in the software or am I using the -b option in a wrong way?
Example output for "-b 1500" option
chr10 374751 375342 0.0
204404 73 NM_212479 chr10 170642 285200 +...
2009-09-30 00:15:46 UTC by denizk
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Hi
I've been working with the FindNeighboringGenes tool and trying to limit the neighborhood with the -b option. However it seems that genes even far outside of this boundary are reported. Is that a bug in the software or am I using the -b option in a wrong way?
So, far I've filtered the FNG file with the following awk command:
awk 'FS="\t" { if($1 || ($4 && $4 <=...
2009-09-21 02:06:19 UTC by denizk
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biotelerock made 1 file-release changes.
2009-08-31 17:04:04 UTC by biotelerock
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biotelerock made 2 file-release changes.
2009-08-17 19:07:01 UTC by biotelerock
