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STARS - sequence typing Icon

STARS - sequence typing

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by mansuen, northstar1


STARS is an alternative interface to staden for studying polymorphisms in short sequences with batch processing, manual editing, trace viewing and data management. STARS was initially designed for Multi Locus Sequence Typing of bacteria.


http://www.cbrg.ox.ac.uk/~mchan/stars





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Registered:

2003-11-14

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  • Project Information Updated

    posted by sf-robot 304 days ago

  • Update 17th December 2008

    STARS was originally written in 2001 for the bioinformatics servers at the University of Oxford running the Solaris operating system. The original developers are now in other employment and are no longer supporting or developing STARS as part of their work. The recommended route for obtaining STARS is now the biolinux project run by the NERC Environmental Bioinformatics Centre in Oxford (http://nebc.nox.ac.uk/biolinux.html). This is a customised distribution of linux for bioinformatics which incorporates staden and STARS as part of the distribution. If you wish to use STARS you should contact the NEBC through their website. Official support is only available to NERC staff but there is a discussion list for community support (http://nebc.nox.ac.uk/mailman/listinfo/bio-linux). The original software is still available through sourceforge (http://sourceforge.net/projects/stars/) but is no longer supported. For specific groups of users there is additional support. For those interested in using STARS for Multi Locus Sequence Typing of bacteria informal advice is available from Keith Jolley at the Department of Zoology, University of Oxford (keith.jolley@zoo.ox.ac.uk). For users at the University of Oxford the STARS software is installed and supported on the servers of the Computational Biology Research Group (http://www.cbrg.ox.ac.uk).

    posted by mansuen 334 days ago

  • cvs

    source committed to cvs

    posted by mansuen 1820 days ago

  • Code committed

    mansuen committed patchset 3 of module stars to the STARS - sequence typing CVS repository, changing 1 files

    posted by mansuen 1823 days ago

  • Code committed

    mansuen committed patchset 2 of module stars to the STARS - sequence typing CVS repository, changing 33 files

    posted by mansuen 1823 days ago

  • Code committed

    mansuen committed patchset 1 of module stars to the STARS - sequence typing CVS repository, changing 33 files

    posted by mansuen 1823 days ago

  • Software release

    STARS has been released on sourceforge. For installation instructions please see http://www.molbiol.ox.ac.uk/~paediat/stars/index.html which is the main home page of the project.

    posted by mansuen 2091 days ago

  • File released: /stars/stars-1.2a/stars-1.2a.tar.gz

    posted 2091 days ago

  • stars stars-1.2a file released: stars-1.2a.tar.gz

    posted 2092 days ago

  • Forum thread added

    mansuen created the bug fix - single stranded regions forum thread

    posted by mansuen 2155 days ago

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