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RepMiner takes a graph theory approach to the classification and assembly of the repetitive fraction of genomic sequence data. Sequence lengths analyzed by RepMiner can range from full length transposable elements to low coverage sample sequence data.

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http://repminer.sourceforge.net





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Topic:

Database Engines/Servers, Bio-Informatics

Operating System:

OS Independent (Written in an interpreted language)

License:

GNU General Public License (GPL)

Intended Audience:

End Users/Desktop, Developers, Science/Research, Advanced End Users

User Interface:

Command-line

Database Environment:

MySQL, Perl DBI/DBD

Programming Language:

Perl

Registered:

2007-03-30

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  • Clustering of Full Length LTR Retrotransposons
  • Simulated sample sequence clusters

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