Quikr is a QUadratic, Iterative, K-mer based Reconstruction technique that utilizes sparsity promoting ideas from the field of compressed sensing to reconstruct the composition of a bacterial community (when the input data is 454-like pyrosequencing data). This extremely fast method comes with a default training database but can be custom trained. Typically reconstruction is accurate down to the genus level.

See the README file for installation directions.
Usage details are in the folder /quikr/doc

Please contact me if there are any concerns/issues.

Thanks and enjoy!

Project Activity

See All Activity >

Follow Quikr

Quikr Web Site

You Might Also Like
Employee monitoring software with screenshots Icon
Employee monitoring software with screenshots

Clear visibility and insights into how employees work. Even remotely.

Stay productive working at any distance from anywhere with Monitask.
Learn More
Rate This Project
Login To Rate This Project

User Reviews

Be the first to post a review of Quikr!

Additional Project Details

Registered

2012-12-10
Report inappropriate content