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The git news in this relase are major bugfixes to pyp_utils/reorder(). I've fixed cases where the pedigree was not correctly reordered. When this happened, pyp_utils/renumber() caught KeyErrors while looking up sires/dams and set parents to unknown, ignoring known relationships in the pedigree. George Wiggans's persistent reports that the relationships being calculated were just not right led...
2007-06-26 19:47:40 UTC by wintermind
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03/22/2007 Minor documentation fixes and additions.
03/22/2007 Added a new method, savegraph(), to
pyp_newclasses/NewPedigree for saving graphs to
adjacency matrices.
03/22/2007 Added a new value of pedsource,
'graphfile', which can load a pedigree stored as
a directed graph in a text file in an adjacency
list.
03/22/2007 Added a new argument to
pyp_utils/renumber()...
2007-03-22 18:13:31 UTC by wintermind
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A couple of lingering references to Numarray were removed. PyPedal is now 100% NumPy.
2007-03-19 18:55:23 UTC by wintermind
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Two bugs were fixed in this release, including a metadata bug which caused problems using those data on renumbered pedigrees, and a dependency on Numarray was replaced with a NumPy call; thanks to Matt Kelly for reporting that problem.
2007-03-14 13:34:17 UTC by wintermind
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Minor bugfix for the "u" pedigree format code, revised documentation including better Windows installation instructions, and a cleaned-up set of files in the tarball. The MANIFEST.in file was rewritten to include only the necessary files for running PyPedal.
2006-11-02 20:54:57 UTC by wintermind
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New release includes several bugfixes for handling strings as animal IDs (ASD format codes). Also added pyp_metrics/mating_coi_group(), which can be used to identify the minimum-inbreeding matings from a set of proposed parents.
2006-04-17 18:42:13 UTC by wintermind
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There's a new three-generation pedigree report, as well as a number of bugfixes.
2006-04-13 18:29:00 UTC by wintermind
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I checked a few files this morning and it looks like the merging that went on last night when I checked Beta 1 into CVS worked correctly, that is, the way I expected it to. Sync away.
2005-11-22 13:55:54 UTC by wintermind
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I checked the current tree into CVS tonight. I always seem to break things using CVS, so I can't guarantee that I have everything correctly merged. Unless you're a hardy soul, I recommend that you stick with the source tarball in the latest release.
2005-11-22 01:28:01 UTC by wintermind
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The first Beta release of PyPedal is out! The API is frozen for version 2.0.0 and no new features are planned. I'm currently in fix-bugs-and-improve-documentation mode.
2005-11-15 17:41:29 UTC by wintermind
