Placnet

Plasmid Constellation Network project.

Placnet is a new tools for plasmid analysis in NGS projects. Placnet has been written in Perl. It's been optimized to work with Illumina sequences but it also works with 454, Iontorrent or any of the actual sequence technologies.

The input of placnet is a set of contigs and one or more SAM files with the mapping of the reads against the contigs. Placnet obtains a set of files, easily opened on Cytoscape software or other network tools.

Please cite PLACNET as: Lanza VF, de Toro M, Garcillán-Barcia MP, Mora A, Blanco J, Coque TM, de la Cruz F: Plasmid Flux in Escherichia coli ST131 Sublineages, Analyzed by Plasmid Constellation Network (PLACNET), a New Method for Plasmid Reconstruction from Whole Genome Sequences. PLoS Genet 2014, 10:e1004766.

Project Samples

Vibrio cholerae Pacini 1854 (Lanza et al., 2014)

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License

Creative Commons Attribution License

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Additional Project Details

Operating Systems

BSD, Linux

User Interface

Console/Terminal

Programming Language

Perl

Related Categories

Perl Bio-Informatics Software

Registered

2014-09-01

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