Picard release 1.107
27 January 2014
- Build javadoc for variant and tribble packages as part of sourceforge release.
- Fix annoying bug where in order to use SamLocusIterator as an iterator one first had to call the .iterator() method on it to prime it. Now auto-primes.
- Support writing of vcf.gz, i.e. bgzf format, but only without on-the-fly index creation.
- Set buffer size of BclReader to Defaults.BUFFER_SIZE, which defaults to 128K and can be controlled via -Dsamjdk.buffer_size=<buffer_size>. Previous size was always 8192.
- Added nominal support for VCF4.2 headers (but just the headers)