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README.txt 2014-01-27 608 Bytes
picard-tools-1.107.zip 2014-01-27 46.8 MB
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Picard release 1.107
27 January 2014

- Build javadoc for variant and tribble packages as part of sourceforge release.

- Fix annoying bug where in order to use SamLocusIterator as an iterator one first had to call the .iterator() method on it to prime it.  Now auto-primes.

- Support writing of vcf.gz, i.e. bgzf format, but only without on-the-fly index creation.

- Set buffer size of BclReader to Defaults.BUFFER_SIZE, which defaults to 128K and can be controlled via -Dsamjdk.buffer_size=<buffer_size>.  Previous size was always 8192.

- Added nominal support for VCF4.2 headers (but just the headers)
Source: README.txt, updated 2014-01-27