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| Name | Modified | Size | Downloads / Week |
|---|---|---|---|
| Parent folder | |||
| cross_genome.README | 2014-08-22 | 786 Bytes | |
| cross_genome.tar.gz | 2014-08-22 | 1.1 MB | |
| Totals: 2 Items | 1.1 MB | 2 | |
#Cross_genome: genome scaffolding using cross-species synteny # Or merge scaffolds from two assembly files: ref.fastq assembly.fastq /tmp/src/cross_genome -gap 20000 -nodes 20 -score 100 <ref_fasta/q_file> <assembly_fasta/q_file> <merged.fasta_file> /tmp/src/cross_genome -gap 20000 -nodes 20 -score 100 ref_fasta target_fasta merged.fasta gap: maximum gap size allowed to join the two contigs node: number of CPU threads score: Smith-waterman score Note: (1) You need to type the full path in order to make it work; (2) Using larger gap size can increase scaffold size, but sometimes, it also brings errors. ======== Install: ======== gunzip cross_genome.tar.gz tar xvf cross_genome.tar make Please contact Zemin Ning ( zn1@sanger.ac.uk ) for any further information.