Parallel implementation of BWA (http://bio-bwa.sourceforge.net/) using the OpenMPI library.

Features

  • Parallel implementation of BWA's aln, sampe, and samse commands
  • More efficient multithreading than BWA for aln
  • Can combine parallelism and multithreading for aln
  • Future releases will see sampe and samse given multithreading options
  • Unfortunately, pBWA does not support gzipped input read files

Project Activity

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License

MIT License, GNU General Public License version 3.0 (GPLv3)

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Registered

2011-04-03
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