Musket - short read error corrector

beta

a parallel short-read error corrector for Illumina sequencing

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Description

Musket is an efficient multistage k-mer based corrector for Illumina short read data. This corrector employs the k-mer spectrum approach and introduces three correction techniques in a multistage workflow. Our performance evaluation results, in terms of correction quality and de novo genome assembly measures, reveal that Musket is consistently one of the top performing substitution-error-based correctors. In addition, Musket is multi-threaded using a master-slave model and demonstrates superior parallel scalability compared to all other evaluated correctors as well as a highly competitive overall execution time.

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Additional Project Details

Intended Audience

Healthcare Industry, Science/Research

User Interface

Command-line, Console/Terminal

Programming Language

C++

Registered

2012-08-14
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