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Rename the unix name of my project
9 months ago
Mainz / China / CST
CUDASW++: Smith-Waterman Algorithm
The fastest Smith-Waterman protein database search algorithm on GPUs
6 days ago
CUSHAW2: Parallel Gapped Read Alignment
One of the leading short-/long-read aligner to large genomes
9 minutes ago
CUSHAW3: Accurate Short-read Alignment
CUSHAW: CUDA-based Short Read Alignment
the first aligner introducing a complete paired-end alignment on GPUs
DecGPU: CUDA-based Error Correction
The first distributed and parallel short-read error corrector on GPUs
4 days ago
lightweight GPU-based sparse matrix-vector multiplication (SpMV)
1 day ago
MSA-CUDA: multiple sequence aligner
multiple sequence alignment on CUDA-enabled GPUs.
MSAProbs: Multiple Sequence Alignment
One of the most accurate multiple protein sequence aligners
Musket - short read error corrector
a parallel short-read error corrector for Illumina sequencing
PASHA: Parallelized Short Read Assembly
One of the fastest parallel short read assemblers for large genomes.
ParaBWT - parallel BWT construction
a parallel and space-efficient Burrows-Wheeler transfrom constructor
An integrated caller for germline and somatic SNVs
SWAPHI-LS: Alignment on Xeon Phi Cluster
Smith-Waterman long DNA sequence alignment on Xeon Phi clusters
SWAPHI: Smith-Waterman on Intel Xeon Phi
the first Smith-Waterman sequence alignment on Xeon Phi coprocessors
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