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MUMmer is a modular system for the rapid whole genome alignment of finished or draft sequence. This package provides an efficient suffix tree library, seed-and-extend alignment, SNP detection, repeat detection, and visualization tools.

Project Samples

ordered and oriented multiplot of finished vs. draft seqs percent-identity color coded dotplot of a promer alignment unordered multiplot of finished vs. draft sequence alignment percent identity plot (bot) compared with gene models (top)

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Categories

Bio-Informatics

License

Artistic License

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Additional Project Details

Operating Systems

Linux, BSD

Intended Audience

Science/Research, Advanced End Users

User Interface

Command-line

Programming Language

Perl, C++, C

Related Categories

Perl Bio-Informatics Software, C++ Bio-Informatics Software, C Bio-Informatics Software

Registered

2005-03-05
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