Maximum Common Genome Alignment (MCGA) Tool

MCGA is a bioinformatics analysis tool written in Python for generating core genome alignment for bacterial whole genome sequences which can be used to construct phylogenetic trees.

Features

  • Sequence clustering with CD-HIT software
  • Summarising core and accessory genome statistics
  • Summarise the shared or accessory gene content between strains
  • Creating multiple sequence alignments based on core gene content
  • Identify polymorphic sites in 'core genome' sequence alignments

Project Activity

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Categories

Bio-Informatics

License

GNU Library or Lesser General Public License version 3.0 (LGPLv3)

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Additional Project Details

Intended Audience

Science/Research

User Interface

Command-line

Programming Language

Python

Related Categories

Python Bio-Informatics Software

Registered

2015-05-27
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