Download Latest Version GBrowse-2.54 (5.5 MB) Get Updates
Home / OldFiles
Name Modified Size InfoDownloads / Week
Parent folder
apollo-1.11.0.tgz 2009-06-04 26.7 MB
0
apollo.1.9.3.tar.gz 2008-07-02 34.0 MB
0
apollo.1.9.0.tar.gz 2008-05-12 34.0 MB
0
apollo.1.8.0.tar.gz 2008-04-07 33.1 MB
0
apollo.1.7.1.tar.gz 2008-01-15 31.2 MB
0
apollo.1.7.0.tar.gz 2008-01-15 31.0 MB
0
gmod-0.5-RC1-no-apollo-db.tar.gz 2007-01-06 3.6 MB
0
Generic-Genome-Browser-1.66-RC3.tar.gz 2006-11-29 2.2 MB
0
Generic-Genome-Browser-1.66-RC2.tar.gz 2006-11-09 2.2 MB
0
Generic-Genome-Browser-1.66-RC1.tar.bz2 2006-10-18 1.4 MB
0
Generic-Genome-Browser-1.65-rc2.tar.bz2 2006-07-18 1.6 MB
0
apollo.1.6.5.tar.gz 2006-07-05 20.5 MB
0
apollo.1.6.4.tar.gz 2006-01-05 14.4 MB
0
Generic-Genome-Browser-1.64-rc1.tar.bz2 2005-11-16 1.4 MB
0
apollo.1.6.0.tar.gz 2005-11-03 14.5 MB
0
FlashGViewer-0.2.tar 2005-11-02 931.8 kB
0
apollo.1.5.4.tar.gz 2005-08-22 16.2 MB
0
bioperl-1.5_for_gmod.tar.bz2 2005-07-15 5.3 MB
0
Class-DBI-Pg-0.06-multiple-schemata.patch 2005-07-13 2.8 kB
0
gmod-0.003.tar.gz 2005-07-08 2.9 MB
0
apollo.1.5.2.tar.gz 2005-07-07 13.9 MB
0
apollo.1.5.1.tar.gz 2005-06-21 20.9 MB
0
apollo.1.5.0.tar.gz 2005-03-18 25.5 MB
0
apollo.1.4.6.tar.gz 2004-11-17 25.1 MB
0
pubfetch-0.01.tar.gz 2004-09-16 6.5 MB
0
pubfetch-0.01-src.tar.gz 2004-09-16 7.5 MB
0
citrina-0.5-parsers.tar.gz 2004-07-23 6.0 kB
0
apollo.1.4.5.tar.gz 2004-07-02 13.5 MB
0
so.tar.bz2 2004-06-30 33.2 kB
0
gds-0.1.tar.gz 2004-05-14 4.2 MB
0
apollo.1.4.4.tar.gz 2004-04-23 12.2 MB
0
apollo.1.4.3.tar.gz 2004-04-19 11.9 MB
0
gmod-0.002.tar.gz 2004-03-29 5.7 MB
0
apollo.1.4.2.tar.gz 2004-03-22 12.0 MB
0
Generic-Genome-Browser-1.60.tar.gz 2004-03-17 1.4 MB
0
Generic-Genome-Browser-1.59.tar.gz 2004-03-16 1.4 MB
0
gmod-0.001.tar.gz 2004-01-07 5.2 MB
0
apollo.1.3.6.tar.gz 2003-11-04 10.6 MB
0
apollo.1.3.5.tar.gz 2003-08-08 10.1 MB
0
apollo.1.3.4.tar.gz 2003-06-17 10.0 MB
0
apollo.1.3.2.tar.gz 2003-05-19 10.8 MB
0
apollo.1.3.1.tar.gz 2003-05-05 10.8 MB
0
GO_modules.tar.gz 2003-03-10 35.1 kB
0
apollo.1.2.6.tar.gz 2003-03-10 11.3 MB
0
apollo-with-src.1.2.5.tar.gz 2003-02-28 11.3 MB
0
atidb_sampleData.tar.gz 2003-02-25 316.4 MB
0
atidb_software.tar.gz 2003-02-25 629.7 kB
0
Generic-Genome-Browser-1.49.tar.gz 2003-02-13 497.6 kB
0
Generic-Genome-Browser-1.48.tar.gz 2003-02-09 623.9 kB
0
apollo.1.2.3.zip 2002-12-19 9.6 MB
0
apollo-with-src.1.2.3.tar.gz 2002-12-19 11.3 MB
0
chado_ag.gz 2002-12-19 99.3 MB
0
apollo.1.2.2.zip 2002-12-06 7.4 MB
0
apollo-with-src.1.2.2.tar.gz 2002-12-06 9.0 MB
0
chado_pf.gz 2002-11-04 15.3 MB
0
chado_pf.ddl 2002-11-04 24.8 kB
0
gmod_readme 2002-11-04 1.4 kB
0
apollo.1.1.11.zip 2002-10-30 9.5 MB
0
apollo-with-src.1.1.11.tar.gz 2002-10-30 11.1 MB
0
gramene-dump.sql.gz 2002-10-11 1.1 MB
0
apollo-with-src.1.1.9.tar.gz 2002-09-26 10.2 MB
0
apollo.1.1.9.zip 2002-09-26 8.7 MB
0
apollo-with-src.1.1.8.tar.gz 2002-09-09 9.6 MB
0
apollo.1.1.8.tar.gz 2002-09-04 9.6 MB
0
apollo.1.1.8.zip 2002-09-04 8.6 MB
0
apollo.1.1.7.zip 2002-07-29 7.5 MB
0
apollo-with-src.1.1.7.tar.gz 2002-07-29 8.0 MB
0
README-BioGraphics 2002-07-07 132 Bytes
0
apollo.1.1.6.zip 2002-07-01 7.0 MB
0
apollo-with-src.1.1.6.tar.gz 2002-07-01 7.5 MB
0
apollo-with-src.1.1.5.tar.gz 2002-05-09 6.9 MB
0
apollo.1.1.5.zip 2002-05-09 6.3 MB
0
Generic-Genome-Browser-1.41.tar.gz 2002-05-04 451.8 kB
0
Bio-Graphics-1.05.tgz 2002-04-13 63.4 kB
0
Generic-Genome-Browser-1.40.tar.gz 2002-04-13 419.4 kB
0
Bio-Graphics-1.04.tar.gz 2002-04-12 63.3 kB
0
Generic-Genome-Browser-1.39.tar.gz 2002-04-12 419.2 kB
0
Bio-Graphics-1.03.tar.gz 2002-04-12 63.1 kB
0
labdoc-2.0.tar.gz 2002-04-09 2.7 kB
0
Generic-Genome-Browser-1.38.tar.gz 2002-04-09 419.6 kB
0
apollo.1.1.3.zip 2002-04-02 5.9 MB
0
apollo.1.1.3.tar.gz 2002-04-02 6.4 MB
0
Generic-Genome-Browser-1.37.tar.gz 2002-04-01 384.0 kB
0
Bio-Graphics-1.02.tar.gz 2002-03-31 62.7 kB
0
Generic-Genome-Browser-1.36.tar.gz 2002-03-24 373.3 kB
0
Bio-Graphics-1.01.tar.gz 2002-03-24 61.0 kB
0
Bio-Graphics-1.00.tar.gz 2002-03-06 61.4 kB
0
Generic-Genome-Browser-1.35.tar.gz 2002-03-06 314.1 kB
0
org.bdgp.jdk1_1.noxml.tar.gz 2002-03-01 6.0 MB
0
org.bdgp.jdk1_1.tar.gz 2002-03-01 6.8 MB
0
org.bdgp.noxml.tar.gz 2002-03-01 6.1 MB
0
Generic-Genome-Browser-1.34.tar.gz 2002-02-22 312.1 kB
0
Bio-Graphics-0.98.tar.gz 2002-02-22 58.7 kB
0
Generic-Genome-Browser-1.33.tar.gz 2002-02-19 311.1 kB
0
Bio-Graphics-0.97.tar.gz 2002-02-19 59.0 kB
0
Generic-Genome-Browser-1.32.tar.gz 2002-02-19 312.6 kB
0
Generic-Genome-Browser-1.31.tar.gz 2002-01-24 308.8 kB
0
Generic-Genome-Browser-1.02.tar.gz 2002-01-21 310.0 kB
0
Bio-Graphics-0.96.tar.gz 2002-01-11 55.5 kB
0
Generic-Genome-Browser-1.01.tar.gz 2002-01-11 308.7 kB
0
elegans.gff.gz 2002-01-03 42.5 MB
0
yeast.gff 2002-01-03 1.2 MB
0
Generic-Genome-Browser-1.00.tar.gz 2002-01-03 306.7 kB
0
Bio-Graphics-0.95.tar.gz 2002-01-03 55.3 kB
0
example_conf_files.tar.gz 2001-12-19 4.0 kB
0
Bio-Graphics-0.91.tar.gz 2001-11-19 63.1 kB
0
Bio-Graphics-0.90.tar.gz 2001-11-19 62.4 kB
0
Bio-Graphics-0.85.tar.gz 2001-10-01 29.5 kB
0
Bio-Graphics-0.82.tar.gz 2001-07-20 29.0 kB
0
Bio-Graphics-0.81.tar.gz 2001-06-12 28.1 kB
0
Totals: 110 Items   1.2 GB 0 
This is an implementation of the 14 chromosomes of P.falciparum in the chado
schema (see chado.ddl in this directory for ddl used).

Please send any comments or problems to:

	David Emmert (FlyBase)
	emmert@morgan.harvard.edu

The data was taken from the following GenBank RefSeq records:

	NC_000521
	NC_000910
	NC_004314
	NC_004315
	NC_004316
	NC_004317
	NC_004318
	NC_004325
	NC_004326
	NC_004327
	NC_004328
	NC_004329
	NC_004330
	NC_004331

A few comments about this implementation:

1) Interbase locations were used.

1) To save time/pain in parsing, the "gene" and "mRNA" features in the GB
   records were ignored.  The "protein-coding gene" and "messenger RNA" 
   locations in chado_pf were extrapolated from the "CDS" locations.  As far
   as I could tell, the GB "gene" and "mRNA" locations always matched up
   with the "CDS" , but a consciencous load of the data would probably have
   a close look at the GB "mRNA" features to see if there are any UTRs before
   discounting them as I have done.

2) The same "/gene" value was used in several different CDS features in the
   GB annotations.  In order to have unique values, when i enountered these,
   I appended a number, "_n", to the gene symbol, to keep it unique.  When
   no "/gene" value was given, I named genes using the GB-acc#, eg, 
   "NC_004328_unknown_gene".

3) I didn't get the rRNAs or misc_RNAs in!
Source: gmod_readme, updated 2002-11-04