FFP (Feature frequency profile) is an alignment free comparison tool for phylogenetic analysis and text comparison. It can be applied to nucleotide sequences, complete genomes, proteomes and even used for text comparison.

Features

  • Comparison of Genomes, protein and nucleic acid sequences in FASTA format
  • Phylip style distance matrix output
  • Over a dozen distance measures
  • Uses a fast alignment free method of comparison
  • Implementation of fast Rabin-Karp hashing for k-mer counting
  • Spaced-seed/masking hash function allows DNA/Amino Acid mismatches

Project Activity

See All Activity >

Categories

Bio-Informatics

License

Other License

Follow FFP-Feature Frequency Profile Phylogeny

FFP-Feature Frequency Profile Phylogeny Web Site

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Additional Project Details

Operating Systems

Linux

Intended Audience

Science/Research, Education

User Interface

Command-line

Programming Language

Unix Shell, Perl, C

Database Environment

Flat-file

Related Categories

Unix Shell Bio-Informatics Software, Perl Bio-Informatics Software, C Bio-Informatics Software

Registered

2010-10-29
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