FFP-Feature Frequency Profile Phylogeny download

FFP (Feature frequency profile) is an alignment free comparison tool for phylogenetic analysis and text comparison. It can be applied to nucleotide sequences, complete genomes, proteomes and even used for text comparison.

Features

Comparison of Genomes, protein and nucleic acid sequences in FASTA format
Phylip style distance matrix output
Over a dozen distance measures
Uses a fast alignment free method of comparison
Implementation of fast Rabin-Karp hashing for k-mer counting
Spaced-seed/masking hash function allows DNA/Amino Acid mismatches

Project Activity

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License

Other License

Follow FFP-Feature Frequency Profile Phylogeny

FFP-Feature Frequency Profile Phylogeny Web Site

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Additional Project Details

Operating Systems

Linux

Intended Audience

Education, Science/Research

User Interface

Command-line

Programming Language

C, Perl, Unix Shell

Database Environment

Flat-file

Related Categories

Unix Shell Bio-Informatics Software, Perl Bio-Informatics Software, C Bio-Informatics Software

Registered

2010-10-29

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