FFP-Feature Frequency Profile Phylogeny

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Description

FFP (Feature frequency profile) is an alignment free comparison tool for phylogenetic analysis and text comparison. It can be applied to nucleotide sequences, complete genomes, proteomes and even used for text comparison.

FFP-Feature Frequency Profile Phylogeny Web Site

Categories

Bio-Informatics

License

Other License

Features

  • Comparison of Genomes, protein and nucleic acid sequences in FASTA format
  • Phylip style distance matrix output
  • Over a dozen distance measures
  • Uses a fast alignment free method of comparison
  • Implementation of fast Rabin-Karp hashing for k-mer counting
  • Spaced-seed/masking hash function allows DNA/Amino Acid mismatches

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Additional Project Details

Intended Audience

Education, Science/Research

User Interface

Command-line

Programming Language

C, Perl, Unix Shell

Registered

2010-10-28
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