Name | Modified | Size | Downloads / Week |
---|---|---|---|
readme.txt | 2012-07-18 | 1.1 kB | |
F2C2 v0.95b.zip | 2012-07-18 | 608.9 kB | |
F2C2 v0.9b.zip | 2012-05-25 | 230.4 kB | |
F2C2-v0.7b.tar.gz | 2011-11-04 | 217.9 kB | |
Totals: 4 Items | 1.1 MB | 0 |
F2C2 version 0.95b Performs Flux Coupling Analysis based on the F2C2 algorithm. Accompanying tool for: dx.doi.org/10.1186/1471-2105-13-57 USAGE: 1. [fctable, blocked] = F2C2(solver, network [, tol]) Compute the flux coupling for every pair of reactions in the network. PARAMETERS: a. solver: LP solver to us - possible values: 'linprog', 'clp', 'lindo', 'glpk' b. network: metabolic network structure with fileds - stoichiometricMatrix - reversibilityVector - Reactions - Metabolites c. tol: tolerance level (default value is 10e-6) OUTPUT: a. fctable: the resulting flucx coupling table Interpretation for element (i, j): 0 - uncoupled 1 - fully coupled 2 - partially coupled 3 - reaction i is directionally coupled to j 4 - reaction j is directionally coupled to i b. blocked: a 0/1 vector with a 1 corresponding to a blocked reaction.