ExprEssence Plugin for Cytoscape

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Last Update: 2015-07-24

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ExprEssence uses differential data (e.g. gene expression data) to highlight those links of a network, across which the largest changes can be observed comparing two experiments. * Please cite http://www.biomedcentral.com/1752-0509/4/164 *

Tutorial: http://www.ibima.med.uni-rostock.de/warsow/ExprEssence.shtml

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GNU Library or Lesser General Public License version 2.0 (LGPLv2)

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2010-06-14

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HeatmapGenerator is a graphical user interface software program written in C++, R, and OpenGL to create customized gene expression heatmaps from RNA-seq and microarray data in medical research. HeatmapGenerator can also be used to make heatmaps in a variety of other non-medical fields. HeatmapGenerator is peer-reviewed published software (http://www.scfbm.org/content/9/1/30). Please cite: [Khomtchouk et al.: "HeatmapGenerator: High performance RNAseq and microarray visualization software suite to examine differential gene expression levels using an R and C++ hybrid computational pipeline." Source Code for Biology and Medicine, 2014 9:30] HeatmapGenerator source code is available at: https://github.com/Bohdan-Khomtchouk/HeatmapGenerator Bohdan Khomtchouk wishes to acknowledge the support of the Department of Defense (DoD) through the National Defense Science & Engineering Graduate Fellowship (NDSEG) Program. HeatmapGenerator is released under the GNU GPL.