If you manage phylogenetic data, Bio::NEXUS can make your life easier with a library and ready-made tools to manipulate and visualize NEXUS files (see http://www.molevol.org/nexplorer and http://search.cpan.org/dist/Bio-NEXUS/doc/Tutorial.pod).

Features

  • easy to install: perl -MCPAN -e 'install Bio::NEXUS'
  • manipulate data in NEXUS files using a command-line tool (nextool.pl)
  • write a custom script to select (exclude) OTUs from matrix AND tree
  • write a custom script to re-root a tree (or a thousand trees at once)
  • generate scalable PS image of data and tree (nexplot.pl)

Project Activity

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Categories

Software Development, Bio-Informatics, Command Line Tools

License

MIT License

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  • tfileme Posted 2013-05-20
    Thanks for updates ;)
    1 user found this review helpful.
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Additional Project Details

Operating Systems

Linux, Mac, Windows

Intended Audience

Developers, Other Audience, Science/Research

Programming Language

Perl

Related Categories

Perl Software Development Software, Perl Bio-Informatics Software, Perl Command Line Tools

Registered

2007-04-16
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