MView reformats the results of a sequence database search or a multiple alignment, optionally adding HTML markup.
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Version 1.51 2008-05-20 Extended SRS links to handle NCBI identifiers of form "ref|accession|". Added 'pcid' option to control normalisation method for all percent identity calculations: 'reference' (normalises with respect to the query or reference sequence, 'aligned' (was the only option, normalises with respect to the length of the aligned region), and 'hit' (normalises with respect to the length of the matched or hit sequence). Added 'minident' option to allow filtering on sequences over some threshold of percent identity. Changed output header text to give information on percent identity normalisation method unless disabled with 'label4' or 'minident' or 'maxident' in operation. Fixed syntax problem in some parsers for perl v5.10.0.
Version 1.51 2008-05-20 Extended SRS links to handle NCBI identifiers of form "ref|accession|". Added 'pcid' option to control normalisation method for all percent identity calculations: 'reference' (normalises with respect to the query or reference sequence, 'aligned' (was the only option, normalises with respect to the length of the aligned region), and 'hit' (normalises with respect to the length of the matched or hit sequence). Added 'minident' option to allow filtering on sequences over some threshold of percent identity. Changed output header text to give information on percent identity normalisation method unless disabled with 'label4' or 'minident' or 'maxident' in operation. Fixed syntax problem in some parsers for perl v5.10.0.
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