Re: [vmtk-users] Brain extraction in VMTK

[Luca A. <luc...@or...>]

Hi Maria,
 skull stripping is out of vmtk's current scope.
You can find very effective skull stripping methods in 
- 3DSlicer (www.slicer.org, Foreground masking (BRAINS) module)
- BRAINSTools (https://github.com/BRAINSia/BRAINSTools)
- FreeSurfer (http://www.freesurfer.net/)
- SPM (http://www.fil.ion.ucl.ac.uk/spm/)

Hope this helps

Luca


On Aug 19, 2013, at 1:14 PM, Maria Grigorieva wrote:

> Hi all, I am working on brain MR, Ct and angiography image segmentation.
> My task is to extract brain segment, and remove the skull.
> How do I strip the skull in VMTK? Are there any modules for this?
> 
> Thank you!
> 
> 
> Maria Grigoryeva
> 
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