Re: [vmtk-users] error saving file
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Re: [vmtk-users] error saving file
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From: Luca A. <luc...@gm...> - 2011-09-29 07:47:11
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Hi Yap, thanks for the feedback. We'll investigate on this behavior. A few extra questions: - are you experiencing crashes with other scripts (especially the ones that involve some render window?) - does level set segmentation crash while processing, while rendering or in the transition between the two? Thanks for any input. Luca On Sep 21, 2011, at 3:48 PM, Yap, Choon Hwai wrote: > Hi Luca, > > I'm running off Snow Leopard. > I'm running the binary package, dragged into applications. > vmtk is available through the terminal without further action (and needs to be run off the terminal for levelsetsegmentation, or it will hang) > > actually sometimes, it shows this error, other times, PypePad quits by itself, terminal shows message "Bus Error" > > regards, > Yap > > > ----- Original Message ----- > From: "Luca Antiga" <luc...@gm...> > To: "Choon Hwai Yap" <cy...@bm...> > Cc: vmt...@li... > Sent: Wednesday, September 21, 2011 2:46:13 AM > Subject: Re: [vmtk-users] error saving file > > Hi Yap, > I am running off a Mac myself and didn't stumble on this one. A few quick questions: > What OS are you running? (Snow Leopard, Lion?) > Are you using a compiled vmtk or the one from the binary package? > Are you running the pipe from PypePad or from the terminal? > > Luca > > > On Sep 21, 2011, at 5:32 AM, Yap, Choon Hwai wrote: > >> Hi all, >> >> I'm running levelsetsegementation on the Mac, and encounter this error everytime I save an output: >> >> ** __NSAutoreleaseFreedObject(): release of previously deallocated object (0x1294ca0) ignored >> >> and the next time I run the same command, it gives a whole lot of errors with allocating memory. >> >> Any help will be greatly appreciated..! >> >> regards, >> Yap >> >> >> ----- Original Message ----- >> From: vmt...@li... >> To: vmt...@li... >> Sent: Tuesday, September 13, 2011 3:50:40 AM >> Subject: vmtk-users Digest, Vol 47, Issue 2 >> >> Send vmtk-users mailing list submissions to >> vmt...@li... >> >> To subscribe or unsubscribe via the World Wide Web, visit >> https://lists.sourceforge.net/lists/listinfo/vmtk-users >> or, via email, send a message with subject or body 'help' to >> vmt...@li... >> >> You can reach the person managing the list at >> vmt...@li... >> >> When replying, please edit your Subject line so it is more specific >> than "Re: Contents of vmtk-users digest..." >> >> >> Today's Topics: >> >> 1. Help with VMTK imagewriter (VITALY KHEYFETS) >> 2. Re: Help with VMTK imagewriter (ido yerushalmy) >> 3. Re: Help with VMTK imagewriter (Luca Antiga) >> 4. Compiling VMTK for Slicer 3D (ido yerushalmy) >> 5. Re: Compiling VMTK for Slicer 3D (Luca Antiga) >> >> >> ---------------------------------------------------------------------- >> >> Message: 1 >> Date: Wed, 7 Sep 2011 15:26:46 -0500 >> From: VITALY KHEYFETS <vit...@ut...> >> Subject: [vmtk-users] Help with VMTK imagewriter >> To: <vmt...@li...> >> Message-ID: >> <67F...@la...> >> Content-Type: text/plain; charset="iso-8859-1" >> >> Hello, >> >> This may be a dumb question, but I am trying to read DICOM images and create a *.vti output file. >> >> This is my script: vmtkimagereader -ifile C:\DICOM_Imag\Normal_PA_Clean\IM1 --pipe vmtkimagewriter -ofile image_volume.vti >> >> I can read and view the images, but when running this code I can't find the file: image_volume.vti >> >> What directory should that be saved in? Or is that just stored in memory? >> >> Thanks, >> >> Vitaly >> -------------- next part -------------- >> An HTML attachment was scrubbed... >> >> ------------------------------ >> >> Message: 2 >> Date: Thu, 8 Sep 2011 08:08:56 +0300 >> From: ido yerushalmy <ido...@gm...> >> Subject: Re: [vmtk-users] Help with VMTK imagewriter >> To: VITALY KHEYFETS <vit...@ut...> >> Cc: vmt...@li... >> Message-ID: >> <CAL8jJRFV6=KS4_E2VMY5xxqteLx7U73NMn83=R3y...@ma...> >> Content-Type: text/plain; charset="iso-8859-1" >> >> Hi Vitaly, >> If I'm not mistaking, the file will be saved in the directory from which you >> are running PypePad. >> Or, if you defined an environment variable for VMTK, in the directory from >> which you launched PypePad. >> >> Hopes this helps, >> Ido >> >> On Wed, Sep 7, 2011 at 11:26 PM, VITALY KHEYFETS >> <vit...@ut...>wrote: >> >>> ** >>> >>> Hello, >>> >>> This may be a dumb question, but I am trying to read DICOM images and >>> create a *.vti output file. >>> >>> This is my script: vmtkimagereader -ifile C:\DICOM_Imag\Normal_PA_Clean\IM1 >>> --pipe vmtkimagewriter -ofile image_volume.vti >>> >>> I can read and view the images, but when running this code I can't find the >>> file: image_volume.vti >>> >>> What directory should that be saved in? Or is that just stored in memory? >>> >>> Thanks, >>> >>> Vitaly >>> >>> >>> ------------------------------------------------------------------------------ >>> Using storage to extend the benefits of virtualization and iSCSI >>> Virtualization increases hardware utilization and delivers a new level of >>> agility. Learn what those decisions are and how to modernize your storage >>> and backup environments for virtualization. >>> http://www.accelacomm.com/jaw/sfnl/114/51434361/ >>> _______________________________________________ >>> vmtk-users mailing list >>> vmt...@li... >>> https://lists.sourceforge.net/lists/listinfo/vmtk-users >>> >>> >> -------------- next part -------------- >> An HTML attachment was scrubbed... >> >> ------------------------------ >> >> Message: 3 >> Date: Fri, 9 Sep 2011 09:07:30 +0200 >> From: Luca Antiga <luc...@or...> >> Subject: Re: [vmtk-users] Help with VMTK imagewriter >> To: ido yerushalmy <ido...@gm...> >> Cc: vmt...@li... >> Message-ID: <B15...@or...> >> Content-Type: text/plain; charset="us-ascii" >> >> Hi Vitaly, >> in addition to Ido's suggestion, you can of course specify the full output path at the command line: >> >> vmtkimagereader -ifile C:\DICOM_Imag\Normal_PA_Clean\IM1 --pipe vmtkimagewriter -ofile C:\DICOM_Imag\image_volume.vti >> >> Best regards >> >> Luca >> >> >> On Sep 8, 2011, at 7:08 AM, ido yerushalmy wrote: >> >>> Hi Vitaly, >>> If I'm not mistaking, the file will be saved in the directory from which you are running PypePad. >>> Or, if you defined an environment variable for VMTK, in the directory from which you launched PypePad. >>> >>> Hopes this helps, >>> Ido >>> >>> On Wed, Sep 7, 2011 at 11:26 PM, VITALY KHEYFETS <vit...@ut...> wrote: >>> Hello, >>> >>> This may be a dumb question, but I am trying to read DICOM images and create a *.vti output file. >>> >>> This is my script: vmtkimagereader -ifile C:\DICOM_Imag\Normal_PA_Clean\IM1 --pipe vmtkimagewriter -ofile image_volume.vti >>> >>> I can read and view the images, but when running this code I can't find the file: image_volume.vti >>> >>> What directory should that be saved in? Or is that just stored in memory? >>> >>> Thanks, >>> >>> Vitaly >>> >>> >>> ------------------------------------------------------------------------------ >>> Using storage to extend the benefits of virtualization and iSCSI >>> Virtualization increases hardware utilization and delivers a new level of >>> agility. Learn what those decisions are and how to modernize your storage >>> and backup environments for virtualization. >>> http://www.accelacomm.com/jaw/sfnl/114/51434361/ >>> _______________________________________________ >>> vmtk-users mailing list >>> vmt...@li... >>> https://lists.sourceforge.net/lists/listinfo/vmtk-users >>> >>> >>> ------------------------------------------------------------------------------ >>> Doing More with Less: The Next Generation Virtual Desktop >>> What are the key obstacles that have prevented many mid-market businesses >>> from deploying virtual desktops? How do next-generation virtual desktops >>> provide companies an easier-to-deploy, easier-to-manage and more affordable >>> virtual desktop model.http://www.accelacomm.com/jaw/sfnl/114/51426474/_______________________________________________ >>> vmtk-users mailing list >>> vmt...@li... >>> https://lists.sourceforge.net/lists/listinfo/vmtk-users >> >> -------------- next part -------------- >> An HTML attachment was scrubbed... >> >> ------------------------------ >> >> Message: 4 >> Date: Sun, 11 Sep 2011 16:23:07 +0300 >> From: ido yerushalmy <ido...@gm...> >> Subject: [vmtk-users] Compiling VMTK for Slicer 3D >> To: vmt...@li... >> Message-ID: >> <CAL8jJRF=enN...@ma...> >> Content-Type: text/plain; charset="iso-8859-1" >> >> Hi all, >> I am using VMTK as a module of Slicer 3D (http://www.slicer.org/). >> I downloaded a few months ago the source code together with Cmake files that >> compile into a set of* DLLs that can be used from within Slicer*. >> I know the code is the same as the standalone version of VMTK, but the >> Cmakes are built differently. >> >> I'm now looking for this package again and just unable to find it, could >> anyone remind me where to look? >> >> Best regards, >> Ido >> -------------- next part -------------- >> An HTML attachment was scrubbed... >> >> ------------------------------ >> >> Message: 5 >> Date: Tue, 13 Sep 2011 09:50:28 +0200 >> From: Luca Antiga <luc...@or...> >> Subject: Re: [vmtk-users] Compiling VMTK for Slicer 3D >> To: ido yerushalmy <ido...@gm...> >> Cc: vmt...@li... >> Message-ID: <DE2...@gm...> >> Content-Type: text/plain; charset="us-ascii" >> >> Hello Ido, >> this is where you should look >> >> http://www.nitrc.org/projects/slicervmtklvlst/ >> >> but I just noticed that you posted messages on the forum there, so you probably already know... >> >> There is a great effort around vmtk in 3D Slicer 4 as well. Daniel Haehn is in any case the person to contact. >> >> Best regards >> >> Luca >> >> >> On Sep 11, 2011, at 3:23 PM, ido yerushalmy wrote: >> >>> Hi all, >>> I am using VMTK as a module of Slicer 3D (http://www.slicer.org/). >>> I downloaded a few months ago the source code together with Cmake files that compile into a set of DLLs that can be used from within Slicer. >>> I know the code is the same as the standalone version of VMTK, but the Cmakes are built differently. >>> >>> I'm now looking for this package again and just unable to find it, could anyone remind me where to look? >>> >>> Best regards, >>> Ido >>> ------------------------------------------------------------------------------ >>> Using storage to extend the benefits of virtualization and iSCSI >>> Virtualization increases hardware utilization and delivers a new level of >>> agility. Learn what those decisions are and how to modernize your storage >>> and backup environments for virtualization. >>> http://www.accelacomm.com/jaw/sfnl/114/51434361/_______________________________________________ >>> vmtk-users mailing list >>> vmt...@li... >>> https://lists.sourceforge.net/lists/listinfo/vmtk-users >> >> -------------- next part -------------- >> An HTML attachment was scrubbed... >> >> ------------------------------ >> >> ------------------------------------------------------------------------------ >> BlackBerry® DevCon Americas, Oct. 18-20, San Francisco, CA >> Learn about the latest advances in developing for the >> BlackBerry® mobile platform with sessions, labs & more. >> See new tools and technologies. Register for BlackBerry® DevCon today! >> http://p.sf.net/sfu/rim-devcon-copy1 >> >> ------------------------------ >> >> _______________________________________________ >> vmtk-users mailing list >> vmt...@li... >> https://lists.sourceforge.net/lists/listinfo/vmtk-users >> >> >> End of vmtk-users Digest, Vol 47, Issue 2 >> ***************************************** >> >> ------------------------------------------------------------------------------ >> All the data continuously generated in your IT infrastructure contains a >> definitive record of customers, application performance, security >> threats, fraudulent activity and more. Splunk takes this data and makes >> sense of it. Business sense. IT sense. Common sense. >> http://p.sf.net/sfu/splunk-d2dcopy1 >> _______________________________________________ >> vmtk-users mailing list >> vmt...@li... >> https://lists.sourceforge.net/lists/listinfo/vmtk-users > |