From: Fangxiang J. <fj...@cs...> - 2011-10-20 17:23:31
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Hi All, I have the same problem with Thomas. What Sergiy mentioned in the email is a nice way to do the conversion. But we need SCIRun pipeline to do that, and it may not be so convenient. So my suggestion to Gordon is can we integrate some conversion like mat to nrrd, mat to txt (back and forth) into teem? Thanks, Fangxiang On 10/19/2011 05:19 AM, tee...@li... wrote: > Send teem-users mailing list submissions to > tee...@li... > > To subscribe or unsubscribe via the World Wide Web, visit > https://lists.sourceforge.net/lists/listinfo/teem-users > or, via email, send a message with subject or body 'help' to > tee...@li... > > You can reach the person managing the list at > tee...@li... > > When replying, please edit your Subject line so it is more specific > than "Re: Contents of teem-users digest..." > > > Today's Topics: > > 1. Re: NRRD vs. MATLAB (Sergiy Volkovych) > 2. Re: NRRD vs. MATLAB (Gordon L. Kindlmann) > > > ---------------------------------------------------------------------- > > Message: 1 > Date: Wed, 19 Oct 2011 14:07:03 +0300 > From: Sergiy Volkovych<vol...@gm...> > Subject: Re: [Teem-users] NRRD vs. MATLAB > To: Thomas Schultz<tsc...@tu...>, teem-users Lists > <tee...@li...> > Message-ID: > <CAO...@ma...> > Content-Type: text/plain; charset="iso-8859-1" > > Hi Thomas, > > I would recommend you to use SCIRun 4.5 for this purpose. > It supports both Matlab and Teem library. You may easily construct a > small pipeline (indeed only from two blocks) to read a *.mat file and > to write it's *.nrrd analog. > I put in the attachement the image with the construtcted pipeline. The > left part reads mat and writes nrrd. The right part is to read nrrd > and to visualize it - just to be sure that it indeed works and you > receive there the same. > > For the back conversion you may use a pipeline ReadField -> > ExportFieldsToMatlab. > > Good luck! > Sergiy. > > 2011/10/19 Thomas Schultz<tsc...@tu...>: >> Dear Teem Users, >> >> having an elegant way of exchanging data between Teem and MATLAB would >> facilitate collaborations with my current colleagues. For getting data >> out of MATLAB, does anyone have anything more automated than writing it >> out as raw data and creating a header using unu make? Even more >> importantly, does anyone have a NRRD->MAT converter or some MATLAB code >> that reads NRRD into MATLAB directly? >> >> Thanks /Thomas >> >> >> ------------------------------------------------------------------------------ >> All the data continuously generated in your IT infrastructure contains a >> definitive record of customers, application performance, security >> threats, fraudulent activity and more. Splunk takes this data and makes >> sense of it. Business sense. IT sense. Common sense. >> http://p.sf.net/sfu/splunk-d2d-oct >> _______________________________________________ >> teem-users mailing list >> tee...@li... >> https://lists.sourceforge.net/lists/listinfo/teem-users > -------------- next part -------------- > A non-text attachment was scrubbed... > Name: MatlabToNrrd.png > Type: image/png > Size: 17377 bytes > Desc: not available > > ------------------------------ > > Message: 2 > Date: Wed, 19 Oct 2011 06:19:10 -0500 > From: "Gordon L. Kindlmann"<gl...@uc...> > Subject: Re: [Teem-users] NRRD vs. MATLAB > To: Thomas Schultz<tsc...@tu...> > Cc: Teem Users<tee...@li...> > Message-ID:<927...@uc...> > Content-Type: text/plain; charset=us-ascii > > > There's some MEX code in teem/src/matlab- is this related to what you want? > > On Oct 19, 2011, at 5:30 AM, Thomas Schultz wrote: > >> Dear Teem Users, >> >> having an elegant way of exchanging data between Teem and MATLAB would >> facilitate collaborations with my current colleagues. For getting data >> out of MATLAB, does anyone have anything more automated than writing it >> out as raw data and creating a header using unu make? Even more >> importantly, does anyone have a NRRD->MAT converter or some MATLAB code >> that reads NRRD into MATLAB directly? >> >> Thanks /Thomas >> >> >> ------------------------------------------------------------------------------ >> All the data continuously generated in your IT infrastructure contains a >> definitive record of customers, application performance, security >> threats, fraudulent activity and more. Splunk takes this data and makes >> sense of it. Business sense. IT sense. Common sense. >> http://p.sf.net/sfu/splunk-d2d-oct >> _______________________________________________ >> teem-users mailing list >> tee...@li... >> https://lists.sourceforge.net/lists/listinfo/teem-users >> > > > > ------------------------------ > > ------------------------------------------------------------------------------ > All the data continuously generated in your IT infrastructure contains a > definitive record of customers, application performance, security > threats, fraudulent activity and more. Splunk takes this data and makes > sense of it. Business sense. IT sense. Common sense. > http://p.sf.net/sfu/splunk-d2d-oct > > ------------------------------ > > _______________________________________________ > teem-users mailing list > tee...@li... > https://lists.sourceforge.net/lists/listinfo/teem-users > > > End of teem-users Digest, Vol 52, Issue 4 > ***************************************** |