Thread: [Staden-package] Problems with staden-linux-x86_64-1-7-1b
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From: Carlos C. <cca...@gm...> - 2008-01-17 10:12:52
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Hi, I've installed today the latest X68_64 version (http://downloads.sourceforge.net/staden/staden-linux-x86_64-1-7-1b.tar.gz?modtime=1200398338&big_mirror=0). However I receive an error message when trying to open a database: ---------------------------------------- invalid command name "load_alignment_matrix" while executing "load_alignment_matrix [keylget gap_defs ALIGNMENT.MATRIX_FILE]" (file "/usr/local/share/staden/linux-x86_64-bin/../lib/gap/gap.tcl" line 683) --------------------------------------------- pregap4 works fine by the way... Does any one succeded to install it? Regards, Carlos |
From: James B. <jk...@sa...> - 2008-01-17 10:18:09
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On Thu, Jan 17, 2008 at 11:12:46AM +0100, Carlos Canchaya wrote: > ---------------------------------------- > > invalid command name "load_alignment_matrix" > while executing > "load_alignment_matrix [keylget gap_defs ALIGNMENT.MATRIX_FILE]" > (file "/usr/local/share/staden/linux-x86_64-bin/../lib/gap/gap.tcl" line > 683) > --------------------------------------------- This typically means a library is missing somewhere. Try setting the STADEN_DEBUG environment variable to 1 and see what it claims. It'll whinge about some libraries not being found that never needed to exist anyway, but hopefully some more system related thing - libcurl, png, or some such - will show up. James -- James Bonfield (jk...@sa...) | Hora aderat briligi. Nunc et Slythia Tova | Plurima gyrabant gymbolitare vabo; A Staden Package developer: | Et Borogovorum mimzebant undique formae, https://sf.net/projects/staden/ | Momiferique omnes exgrabure Rathi. -- The Wellcome Trust Sanger Institute is operated by Genome Research Limited, a charity registered in England with number 1021457 and a company registered in England with number 2742969, whose registered office is 215 Euston Road, London, NW1 2BE. |