[Sashimi-commit] SF.net SVN: sashimi: [2586] branches/release_3-4-0/trans_proteomic_pipeline /src/Makefile

[<spa...@us...>]

Revision: 2586
          http://sashimi.svn.sourceforge.net/sashimi/?rev=2586&view=rev
Author:   spacepod
Date:     2007-11-27 15:44:43 -0800 (Tue, 27 Nov 2007)

Log Message:
-----------
restoring out2summary to Makefile; included in 3.4 to give users time to transition to Out2XML

Modified Paths:
--------------
    branches/release_3-4-0/trans_proteomic_pipeline/src/Makefile

Modified: branches/release_3-4-0/trans_proteomic_pipeline/src/Makefile
===================================================================
--- branches/release_3-4-0/trans_proteomic_pipeline/src/Makefile	2007-11-27 23:21:02 UTC (rev 2585)
+++ branches/release_3-4-0/trans_proteomic_pipeline/src/Makefile	2007-11-27 23:44:43 UTC (rev 2586)
@@ -302,6 +302,7 @@
   Enzyme/ProteolyticEnzyme \
   Enzyme/ProteolyticEnzyme/ProteolyticEnzymeFactory \
   misc \
+  misc/out2summary \
   Parsers \
   Parsers/Algorithm2XML \
   Parsers/Algorithm2XML/Tandem2XML \
@@ -382,6 +383,7 @@
   Enzyme/ProteolyticEnzyme \
   Enzyme/ProteolyticEnzyme/ProteolyticEnzymeFactory \
   misc \
+  misc/out2summary \
   Parsers \
   Parsers/Algorithm2XML \
   Parsers/Algorithm2XML/Tandem2XML \
@@ -459,7 +461,7 @@
 #
 
 EXE_XML = regenerate_VersionInfo/regenerate_VersionInfo PeptideProphetParser ProteinProphet EnzymeDigestionParser XPressPeptideParser ASAPRatioPeptideParser ASAPRatioProteinRatioParser InteractParser DatabaseParser RefreshParser MzXML2Search XPressProteinRatioParser Q3ProteinRatioParser ASAPRatioPvalueParser CompactParser xinteract runperl Sequest2XML Mascot2XML Comet2XML Tandem2XML LibraPeptideParser LibraProteinRatioParser spectrast Out2XML Sqt2XML CombineOut plotspectrast \
-dtafilter runsearch readmzXML dta2mzxml
+dtafilter runsearch out2summary readmzXML dta2mzxml
 
 EXE_HTML = ASAPRatioPeptideCGIDisplayParser.cgi ASAPCGIDisplay.cgi ModelParser.cgi XPressPeptideUpdateParser.cgi XPressCGIProteinDisplayParser.cgi Pep3D_xml.cgi disCidData_xml.cgi getCidData_xml.cgi AnalysisSummaryParser.cgi comet-fastadb.cgi plot-msms.cgi sequest-tgz-out.cgi xpress-prophet-update.cgi cometresult.cgi PepXMLViewer.cgi plotspectrast.cgi dta-xml.cgi
 
@@ -679,6 +681,9 @@
 PepXMLViewer.cgi:
 	cd Visualization/PepXMLViewer; make
 
+out2summary: out2summary.o
+	gcc -O2 -o $@ $^
+
 runsearch: runsearch1.o
 	$(LD) $(DEBUG)    -O2 -o $@ $^
 
@@ -1206,6 +1211,9 @@
 
 dtafilter1.o : dtafilter1.c
 
+out2summary.o : out2summary.c
+	gcc -O2 -c $^
+
 ifeq (${XML_ONLY},1)
 configure-linux: configure-linux-xml
 else
@@ -1346,6 +1354,7 @@
 	cp -f dtafilter ${BIN_DIR}
 	cp -f readmzXML.exe ${BIN_DIR} # consider removing .exe for linux builds
 	cp -f dta2mzxml ${BIN_DIR}
+	cp -f out2summary ${BIN_DIR} # to be retired in favor of out2xml
 	cp -f ../schema/msms_analysis3.dtd ${SCHEMA_DIR}
 	cp -f ../schema/pepXML_std.xsl ${SCHEMA_DIR}
 	cp -f ../schema/pepXML_v18.xsd ${SCHEMA_DIR}


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