[Sashimi-commit] SF.net SVN: sashimi:[5320] trunk/trans_proteomic_pipeline/extern/hpctools/ grid/bin/qsequest

[<sla...@us...>]

Revision: 5320
          http://sashimi.svn.sourceforge.net/sashimi/?rev=5320&view=rev
Author:   slagelwa
Date:     2011-02-26 00:00:54 +0000 (Sat, 26 Feb 2011)

Log Message:
-----------
Checking in first stab at a new Regis specific sequest script

Modified Paths:
--------------
    trunk/trans_proteomic_pipeline/extern/hpctools/grid/bin/qsequest

Modified: trunk/trans_proteomic_pipeline/extern/hpctools/grid/bin/qsequest
===================================================================
--- trunk/trans_proteomic_pipeline/extern/hpctools/grid/bin/qsequest	2011-02-26 00:00:18 UTC (rev 5319)
+++ trunk/trans_proteomic_pipeline/extern/hpctools/grid/bin/qsequest	2011-02-26 00:00:54 UTC (rev 5320)
@@ -30,13 +30,13 @@
 # -- Local settings -----------------------------------------------------------
 
    # Default queue to submit jobs to
-   QQUEUE=${QQUEUE:-xtandem}
+   QQUEUE=${QQUEUE:-sequest_test}
    
    # Default name for jobs in queue
    QNAME=${QNAME:-TPP-sequest}
 
-   # Use 4 threads on 1 node
-   QSUBFLAGS="-l nodes=1:ppn=4"
+   # Use n threads on 1 node
+   QSUBFLAGS="-l nodes=1:ppn=8 -V"
    
    # Programs
    PVM=${PVM-`which pvm 2>/dev/null`}
@@ -142,4 +142,4 @@
    rm -f $root.pep.xml                          # remove previous results
     
    cmds | submit "$dir/$root.sequest" "$dir"    # submit job
-done
\ No newline at end of file
+done


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