samscope

A lightweight OpenGL based interactive SAM/BAM viewer. Quickly and easily generate aggregate statistics from SAM/BAM files like coverage, polarity, and minor allele frequencies, then scroll and explore freely with a simple mouse based interface. Multiple windows can be synchronized for careful comparison across multiple experiments.

Project Samples

A close up on ChIP-SEQ data from a chicken centromere showing forward, reverse, and polarity data simultaneously.

Illustrating feature calling on a heterozygous base in a deep coverage (SureSelect) example.

Minor and major alleles frequencies from RNA-Seq on Natto, also showing GTF gene annotation overlay.

A close up on a small clump of reads showing the read detail display

Project Activity

See All Activity >

License

Affero GNU Public License

Follow samscope

samscope Web Site

You Might Also Like

Automated quote and proposal software for IT solution providers. | ConnectWise CPQ

Create IT quote templates, automate workflows, add integrations & price catalogs to save time & reduce errors on manual data entry & updates.

ConnectWise CPQ, formerly ConnectWise Sell, is a professional quote and proposal automation software for IT solution providers. ConnectWise CPQ offers a wide range of tools that enables IT solution providers to save time, quote more, and win big. Top features include professional quote or proposal templates, product catalog and sourcing, workflow automation, sales reporting, and integrations with best-in-breed solutions like Cisco, Dell, HP, and Salesforce.

Learn More

Rate This Project

User Reviews

Be the first to post a review of samscope!

Additional Project Details

Operating Systems

Linux

Intended Audience

Science/Research

User Interface

OpenGL

Programming Language

C++

Related Categories

C++ Bio-Informatics Software, C++ Data Visualization Software

Registered

2011-09-30

Similar Business Software

TradingView Stock Widgets

Grab powerful charts and add real-time quotes onto your site as quickly as it takes you to pour a morning coffee — just copy and paste our simple iFrame codes. TradingView widgets are easily customizable and will fit any UI, just choose your fighter: -Our pride and joy, Advanced Real-Time Chart...

See Software
dReveal

dReveal is a comprehensive data visualization and reporting tool designed to empower businesses of all sizes. dReveal integrates effortlessly with products of all sizes, providing a powerful reporting solution that scales alongside your business. dReveal streamlines the reporting process...

See Software
DbVisualizer

DbVisualizer is one of the world’s most popular database editors. Developers, analysts, and DBAs use it to elevate their SQL experience with modern tools to visualize and manage their databases, schemas, objects, and table data, and to auto-generate, write and optimize queries. And so much...

See Software