[PyMOL] Align/pair_fit question

[Luke R. <lr...@ms...>]

Hi all,

Is it possible to get access to the transformation matrix 
resulting from an align or pair_fit command?

I want to transform a collection of objects according to 
superposition parameters determined from one of them.  I 
thought I had it working by defining a composite object, 
and while the transformation seems to have worked (all the 
atoms are there in a lines representation), the cartoons 
do not get drawn properly (large fragments of some of the 
objects are missing).  As a result, I want to try 
transforming each object separately, but don't know how to 
access the transformation matrix.

Thanks for any insight. 

Luke