From: Warren L. D. <wa...@de...> - 2003-07-17 02:31:18
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Nat, That is what a ray-tracer hash-table bug looks like -- some of those cylinders aren't being properly registered in 3D space and are then missed. In order to fix this problem, it would sure help if you could send me a session file or pdb + script that can reproduce the problem. Thanks, Warren -- mailto:wa...@de... Warren L. DeLano, Ph.D. Principal Scientist DeLano Scientific LLC Voice (650)-346-1154 Fax (650)-593-4020 > -----Original Message----- > From: pym...@li... [mailto:pymol-users- > ad...@li...] On Behalf Of Nat Echols > Sent: Wednesday, July 16, 2003 5:57 PM > To: PyMOL list > Subject: [PyMOL] weird artifact with cylindrical helices > > > I'm trying to make some figures for a review, and I'm seeing weird little > partial spheres show up when I try to ray-trace a polymerase structure: > > http://bioinfo.mbb.yale.edu/people/nat/weird.png > > They're in the bottom third of the picture, and seem to show up in > the same location in the structure no matter what orientation. Any idea > what's causing these? I just gave up and used regular ribbons. > > ------------------------------------------------------------------------ -- > -- > Nathaniel Echols > Programmer > na...@bi... Gerstein > Lab > 203-589-6765 Yale > University > ------------------------------------------------------------------------ -- > -- > > > > > ------------------------------------------------------- > This SF.net email is sponsored by: VM Ware > With VMware you can run multiple operating systems on a single machine. > WITHOUT REBOOTING! Mix Linux / Windows / Novell virtual machines at the > same time. Free trial click here: http://www.vmware.com/wl/offer/345/0 > _______________________________________________ > PyMOL-users mailing list > PyM...@li... > https://lists.sourceforge.net/lists/listinfo/pymol-users |